PDB entry 1my5

View 1my5 on RCSB PDB site
Description: NF-kappaB p65 subunit dimerization domain homodimer
Class: transcription
Keywords: Immunoglobulin, Ig, beta-sandwich, beta-sheet, homodimer, DNA-binding, Transcription regulation, Activator, Nuclear protein, Phosphorylation
Deposited on 2002-10-03, released 2002-12-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.2
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NF-kappaB p65 (RelA) subunit
    Species: Mus musculus [TaxId:10090]
    Gene: rela
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1my5a_
  • Chain 'B':
    Compound: NF-kappaB p65 (RelA) subunit
    Species: Mus musculus [TaxId:10090]
    Gene: rela
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1my5b_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1my5A (A:)
taelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvai
vfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpdtddrhrieekrkr

    Sequence, based on observed residues (ATOM records): (download) 
    >1my5A (A:)
taelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvai
vfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpdtddrhr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1my5B (B:)
taelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvai
vfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpdtddrhrieekrkr

    Sequence, based on observed residues (ATOM records): (download) 
    >1my5B (B:)
taelkicrvnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvai
vfrtppyadpslqapvrvsmqlrrpsdrelsepmefqylpd