PDB entry 1mmf

View 1mmf on RCSB PDB site
Description: Crystal structure of substrate free form of glycerol dehydratase
Class: Lyase
Keywords: Glycerol dehydratase, Diol dehydratase, Coenzyme B12, TIM barrel, Lyase
Deposited on 2002-09-03, released 2003-06-10
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-10-24, with a file datestamp of 2012-10-19.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.228
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glycerol dehydrase alpha subunit
    Species: Klebsiella pneumoniae [TaxId:573]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1mmfa_
  • Chain 'B':
    Compound: glycerol dehydrase beta subunit
    Species: Klebsiella pneumoniae [TaxId:573]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1mmfb_
  • Chain 'E':
    Compound: glycerol dehydrase beta subunit
    Species: Klebsiella pneumoniae [TaxId:573]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1mmfe_
  • Chain 'G':
    Compound: glycerol dehydrase gamma subunit
    Species: Klebsiella pneumoniae [TaxId:573]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1mmfg_
  • Chain 'L':
    Compound: glycerol dehydrase alpha subunit
    Species: Klebsiella pneumoniae [TaxId:573]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1mmfl_
  • Chain 'M':
    Compound: glycerol dehydrase gamma subunit
    Species: Klebsiella pneumoniae [TaxId:573]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1mmfm_
  • Heterogens: K, B12, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1mmfA (A:)
mkrskrfavlaqrpvnqdgligewpeegliamdspfdpvssvkvdngliveldgkrrdqf
dmidrfiadyainverteqamrleaveiarmlvdihvsreeiiaittaitpakavevmaq
mnvvemmmalqkmrarrtpsnqchvtnlkdnpvqiaadaaeagirgfseqettvgiarya
pfnalallvgsqcgrpgvltqcsveeatelelgmrgltsyaetvsvygteavftdgddtp
wskaflasayasrglkmrytsgtgsealmgysesksmlylesrcifitkgagvqglqnga
vscigmtgavpsgiravlaenliasmldlevasandqtfshsdirrtartlmqmlpgtdf
ifsgysavpnydnmfagsnfdaedfddynilqrdlmvdgglrpvteaetiairqkaarai
qavfrelglppiadeeveaatyahgsnempprnvvedlsaveemmkrnitgldivgalsr
sgfediasnilnmlrqrvtgdylqtsaildrqfevvsavndindyqgpgtgyrisaerwa
eiknipgvvqpdtie

    Sequence, based on observed residues (ATOM records): (download) 
    >1mmfA (A:)
mkrskrfavlaqrpvnqdgligewpeegliamdspfdpvssvkvdngliveldgkrrdqf
dmidrfiadyainverteqamrleaveiarmlvdihvsreeiiaittaitpakavevmaq
mnvvemmmalqkmrarrtpsnqchvtnlkdnpvqiaadaaeagirgfseqettvgiarya
pfnalallvgsqcgrpgvltqcsveeatelelgmrgltsyaetvsvygteavftdgddtp
wskaflasayasrglkmrytsgtgsealmgysesksmlylesrcifitkgagvqglqnga
vscigmtgavpsgiravlaenliasmldlevasandqtfshsdirrtartlmqmlpgtdf
ifsgysavpnydnmfagsnfdaedfddynilqrdlmvdgglrpvteaetiairqkaarai
qavfrelglppiadeeveaatyahgsnempprnvvedlsaveemmkrnitgldivgalsr
sgfediasnilnmlrqrvtgdylqtsaildrqfevvsavndindyqgpgtgyrisaerwa
eiknipgvvqpd

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1mmfB (B:)
vqqttqiqpsftlktreggvasaderadevvigvgpafdkhqhhtlidmphgailkelia
gveeeglharvvrilrtsdvsfmawdaanlsgsgigigiqskgttvihqrdllplsnlel
fsqaplltletyrqigknaaryarkespspvpvvndqmvrpkfmakaalfhiketkhvvq
daepvtlhidlvre

    Sequence, based on observed residues (ATOM records): (download) 
    >1mmfB (B:)
ftlktreggvasaderadevvigvgpafdkhqhhtlidmphgailkeliagveeeglhar
vvrilrtsdvsfmawdaanlsgsgigigiqskgttvihqrdllplsnlelfsqaplltle
tyrqigknaaryarkespspvpvvndqmvrpkfmakaalfhiketkhvvqdaepvtlhid
l

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1mmfE (E:)
vqqttqiqpsftlktreggvasaderadevvigvgpafdkhqhhtlidmphgailkelia
gveeeglharvvrilrtsdvsfmawdaanlsgsgigigiqskgttvihqrdllplsnlel
fsqaplltletyrqigknaaryarkespspvpvvndqmvrpkfmakaalfhiketkhvvq
daepvtlhidlvre

    Sequence, based on observed residues (ATOM records): (download) 
    >1mmfE (E:)
sftlktreggvasaderadevvigvgpafdkhqhhtlidmphgailkeliagveeeglha
rvvrilrtsdvsfmawdaanlsgsgigigiqskgttvihqrdllplsnlelfsqaplltl
etyrqigknaaryarkespspvpvvndqmvrpkfmakaalfhiketkhvvqdaepvtlhi
dlvr

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1mmfG (G:)
msektmrvqdyplatrcpehiltptgkpltditlekvlsgevgpqdvrisrqtleyqaqi
aeqmqrhavarnfrraaeliaipderilaiynalrpfrssqaellaiadelehtwhatvn
aafvresaevyqqrhklrkgs

    Sequence, based on observed residues (ATOM records): (download) 
    >1mmfG (G:)
dyplatrcpehiltptgkpltditlekvlsgevgpqdvrisrqtleyqaqiaeqmqrhav
arnfrraaeliaipderilaiynalrpfrssqaellaiadelehtwhatvnaafvresae
vyqqrhklrkgs

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1mmfL (L:)
mkrskrfavlaqrpvnqdgligewpeegliamdspfdpvssvkvdngliveldgkrrdqf
dmidrfiadyainverteqamrleaveiarmlvdihvsreeiiaittaitpakavevmaq
mnvvemmmalqkmrarrtpsnqchvtnlkdnpvqiaadaaeagirgfseqettvgiarya
pfnalallvgsqcgrpgvltqcsveeatelelgmrgltsyaetvsvygteavftdgddtp
wskaflasayasrglkmrytsgtgsealmgysesksmlylesrcifitkgagvqglqnga
vscigmtgavpsgiravlaenliasmldlevasandqtfshsdirrtartlmqmlpgtdf
ifsgysavpnydnmfagsnfdaedfddynilqrdlmvdgglrpvteaetiairqkaarai
qavfrelglppiadeeveaatyahgsnempprnvvedlsaveemmkrnitgldivgalsr
sgfediasnilnmlrqrvtgdylqtsaildrqfevvsavndindyqgpgtgyrisaerwa
eiknipgvvqpdtie

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1mmfM (M:)
msektmrvqdyplatrcpehiltptgkpltditlekvlsgevgpqdvrisrqtleyqaqi
aeqmqrhavarnfrraaeliaipderilaiynalrpfrssqaellaiadelehtwhatvn
aafvresaevyqqrhklrkgs

    Sequence, based on observed residues (ATOM records): (download) 
    >1mmfM (M:)
yplatrcpehiltptgkpltditlekvlsgevgpqdvrisrqtleyqaqiaeqmqrhava
rnfrraaeliaipderilaiynalrpfrssqaellaiadelehtwhatvnaafvresaev
yqqrhklrkgs