PDB entry 1mfz

View 1mfz on RCSB PDB site
Description: Partially refined 2.8 A Crystal structure of GDP-mannose dehydrogenase from P. aeruginosa
Class: oxidoreductase
Keywords: Rossmann fold, domain-swapped dimer, enzyme complex with cofactor and product, OXIDOREDUCTASE
Deposited on 2002-08-14, released 2003-05-06
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-11-12, with a file datestamp of 2014-11-07.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.206
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: GDP-mannose 6-dehydrogenase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: AlgD
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11759 (0-435)
      • modified residue (0)
      • modified residue (172)
      • modified residue (207)
      • modified residue (241)
      • modified residue (257)
      • modified residue (288)
      • modified residue (293)
      • modified residue (340)
      • modified residue (422)
    Domains in SCOPe 2.07: d1mfza1, d1mfza2, d1mfza3
  • Chain 'B':
    Compound: GDP-mannose 6-dehydrogenase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: AlgD
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11759 (0-435)
      • modified residue (0)
      • modified residue (172)
      • modified residue (207)
      • modified residue (241)
      • modified residue (257)
      • modified residue (288)
      • modified residue (293)
      • modified residue (340)
      • modified residue (422)
    Domains in SCOPe 2.07: d1mfzb1, d1mfzb2, d1mfzb3
  • Chain 'C':
    Compound: GDP-mannose 6-dehydrogenase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: AlgD
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11759 (0-435)
      • modified residue (0)
      • modified residue (172)
      • modified residue (207)
      • modified residue (241)
      • modified residue (257)
      • modified residue (288)
      • modified residue (293)
      • modified residue (340)
      • modified residue (422)
    Domains in SCOPe 2.07: d1mfzc1, d1mfzc2, d1mfzc3
  • Chain 'D':
    Compound: GDP-mannose 6-dehydrogenase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: AlgD
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11759 (0-435)
      • modified residue (0)
      • modified residue (172)
      • modified residue (207)
      • modified residue (241)
      • modified residue (257)
      • modified residue (288)
      • modified residue (293)
      • modified residue (340)
      • modified residue (422)
    Domains in SCOPe 2.07: d1mfzd1, d1mfzd2, d1mfzd3
  • Heterogens: GDX, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1mfzA (A:)
mrisifglgyvgavcagclsarghevigvdvsstkidlinqgkspivepgleallqqgrq
tgrlsgttdfkkavldsdvsficvgtpskkngdldlgyietvcreigfairekserhtvv
vrstvlpgtvnnvvipliedcsgkkagvdfgvgtnpeflrestaikdydfppmtvigeld
kqtgdlleeiyreldapiirktvevaemikytcnvwhaakvtfaneigniakavgvdgre
vmdvicqdhklnlsryymrpgfafggsclpkdvraltyrasqldvehpmlgslmrsnsnq
vqkafdlitshdtrkvgllglsfkagtddlresplvelaemligkgyelrifdrnveyar
vhgankeyieskiphvssllvsdldevvassdvlvlgngdelfvdlvnktpsgkklvdlv
gfmphtttaqaegicw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1mfzB (B:)
mrisifglgyvgavcagclsarghevigvdvsstkidlinqgkspivepgleallqqgrq
tgrlsgttdfkkavldsdvsficvgtpskkngdldlgyietvcreigfairekserhtvv
vrstvlpgtvnnvvipliedcsgkkagvdfgvgtnpeflrestaikdydfppmtvigeld
kqtgdlleeiyreldapiirktvevaemikytcnvwhaakvtfaneigniakavgvdgre
vmdvicqdhklnlsryymrpgfafggsclpkdvraltyrasqldvehpmlgslmrsnsnq
vqkafdlitshdtrkvgllglsfkagtddlresplvelaemligkgyelrifdrnveyar
vhgankeyieskiphvssllvsdldevvassdvlvlgngdelfvdlvnktpsgkklvdlv
gfmphtttaqaegicw

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1mfzC (C:)
mrisifglgyvgavcagclsarghevigvdvsstkidlinqgkspivepgleallqqgrq
tgrlsgttdfkkavldsdvsficvgtpskkngdldlgyietvcreigfairekserhtvv
vrstvlpgtvnnvvipliedcsgkkagvdfgvgtnpeflrestaikdydfppmtvigeld
kqtgdlleeiyreldapiirktvevaemikytcnvwhaakvtfaneigniakavgvdgre
vmdvicqdhklnlsryymrpgfafggsclpkdvraltyrasqldvehpmlgslmrsnsnq
vqkafdlitshdtrkvgllglsfkagtddlresplvelaemligkgyelrifdrnveyar
vhgankeyieskiphvssllvsdldevvassdvlvlgngdelfvdlvnktpsgkklvdlv
gfmphtttaqaegicw

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1mfzD (D:)
mrisifglgyvgavcagclsarghevigvdvsstkidlinqgkspivepgleallqqgrq
tgrlsgttdfkkavldsdvsficvgtpskkngdldlgyietvcreigfairekserhtvv
vrstvlpgtvnnvvipliedcsgkkagvdfgvgtnpeflrestaikdydfppmtvigeld
kqtgdlleeiyreldapiirktvevaemikytcnvwhaakvtfaneigniakavgvdgre
vmdvicqdhklnlsryymrpgfafggsclpkdvraltyrasqldvehpmlgslmrsnsnq
vqkafdlitshdtrkvgllglsfkagtddlresplvelaemligkgyelrifdrnveyar
vhgankeyieskiphvssllvsdldevvassdvlvlgngdelfvdlvnktpsgkklvdlv
gfmphtttaqaegicw