PDB entry 1mec

View 1mec on RCSB PDB site
Description: conformational variability of a picornavirus capsid: ph-dependent structural changes of mengo virus related to its host receptor attachment site and disassembly
Class: virus
Keywords: CARDIO PICORNAVIRUS COAT PROTEIN, Icosahedral virus, Virus
Deposited on 1992-01-17, released 1994-01-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-29, with a file datestamp of 2017-11-24.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: mengo virus coat protein (subunit vp1)
    Species: Encephalomyocarditis virus [TaxId:12107]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12296 (0-273)
      • conflict (44)
    Domains in SCOPe 2.08: d1mec1_
  • Chain '2':
    Compound: mengo virus coat protein (subunit vp2)
    Species: Encephalomyocarditis virus [TaxId:12107]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1mec.1
  • Chain '3':
    Compound: mengo virus coat protein (subunit vp1)
    Species: Encephalomyocarditis virus [TaxId:12107]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12296 (0-230)
      • conflict (57)
    Domains in SCOPe 2.08: d1mec3_
  • Chain '4':
    Compound: mengo virus coat protein (subunit vp1)
    Species: Encephalomyocarditis virus [TaxId:12107]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1mec.1
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1mec1 (1:)
gvenaekgvtentdatadfvaqpvylpenqtkvaffydrsspigrfavksgslesgfapf
snkacpnsviltpgpqfdpaydqlrpqrlteiwgngneetsevfplktkqdysfclfspf
vyykcdlevtlsphtsgahgllvrwcptgtptkpttqvlhevsslsegrtpqvysagpgt
snqisfvvpynsplsvlpavwynghkrfdntgdlgiapnsdfgtlffagtkpdikftvyl
ryknmrvfcprptvffpwptsgdkidmtpragvl

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1mec2 (2:)
dqnteemenlsdrvsqdtagntvtntqstvgrlvgygtvhdgehpascadtasekilave
ryytfkvndwtstqkpfeyiriplphvlsgedggvfgatlrrhylvktgwrvqvqcnasq
fhagsllvfmapeyptldvfamdnrwskdnlpngtrtqtnrkgpfamdhqnfwqwtlyph
qflnlrtnttvdlevpyvniaptsswtqhaswtlviavvapltystgastslditasiqp
vrpvfnglrhevlsrq

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1mec3 (3:)
spipvtirehagtwystlpdstvpiygktpvapanymvgeykdfleiaqiptfignkmpn
avpyieasntavktqplavyqvtlscsclantflaalsrnfaqyrgslvytfvftgtamm
kgkfliaytppgagkptsrdqamqatyaiwdlglnssysftvpfispthfrmvgtdqani
tnvdgwvtvwqltpltyppgcptsakiltmvsagkdfslkmpispapwspq

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1mec4 (4:)
gnstssdknnsssegnegviinnfysnqyqnsidlsanatgsdppktygqfsnllsgavn
afsnmlplla

    Sequence, based on observed residues (ATOM records): (download) 
    >1mec4 (4:)
nnsssegnegviinnfysnqyqnsidlsanatgsdppktygqfsnllsgavnafsnmlpl
la