PDB entry 1m9y
View 1m9y on RCSB PDB site
Description: X-ray crystal structure of Cyclophilin A/HIV-1 CA N-terminal domain (1-146) M-type H87A,G89A Complex.
Class: Isomerase/Viral protein
Keywords: CAPSID, HIV-1, CYCLOPHILIN A, ROTAMASE, Isomerase/Viral protein COMPLEX
Deposited on
2002-07-30, released
2003-05-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.169
AEROSPACI score: 0.48
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: cyclophilin a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1m9ya_ - Chain 'B':
Compound: cyclophilin a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1m9yb_ - Chain 'C':
Compound: hiv-1 capsid
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Uniprot Q72497 (0-145)
- engineered (86)
- engineered (88)
- see remark 999 (119)
Domains in SCOPe 2.08: d1m9yc_ - Chain 'D':
Compound: hiv-1 capsid
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Uniprot Q72497 (Start-145)
- engineered (86)
- engineered (88)
- see remark 999 (119)
Domains in SCOPe 2.08: d1m9yd_ - Chain 'E':
Compound: cyclophilin a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1m9ye_ - Chain 'F':
Compound: cyclophilin a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1m9yf_ - Chain 'G':
Compound: hiv-1 capsid
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Uniprot Q72497 (0-145)
- engineered (86)
- engineered (88)
- see remark 999 (119)
Domains in SCOPe 2.08: d1m9yg_ - Chain 'H':
Compound: hiv-1 capsid
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Uniprot Q72497 (Start-145)
- engineered (86)
- engineered (88)
- see remark 999 (119)
Domains in SCOPe 2.08: d1m9yh_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1m9yA (A:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1m9yB (B:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle
Sequence, based on observed residues (ATOM records): (download)
>1m9yB (B:)
vnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgfm
cqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictaktew
ldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1m9yC (C:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvaaapiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmys
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1m9yD (D:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvaaapiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmys
Sequence, based on observed residues (ATOM records): (download)
>1m9yD (D:)
hqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvgghqaamqmlke
tineeaaewdrlhpvaaapiapgqmreprgsdiagttstlqeqigwmthnppipvgeiyk
rwiilglnkivrmys
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1m9yE (E:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle
- Chain 'F':
Sequence, based on SEQRES records: (download)
>1m9yF (F:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle
Sequence, based on observed residues (ATOM records): (download)
>1m9yF (F:)
vnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgfm
cqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictaktew
ldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>1m9yG (G:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvaaapiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmys
- Chain 'H':
Sequence, based on SEQRES records: (download)
>1m9yH (H:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvaaapiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmys
Sequence, based on observed residues (ATOM records): (download)
>1m9yH (H:)
hqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvgghqaamqmlke
tineeaaewdrlhpvaaapiapgqmreprgsdiagttstlqeqigwmthnppipvgeiyk
rwiilglnkivrmys