PDB entry 1m9d

View 1m9d on RCSB PDB site
Description: X-ray crystal structure of Cyclophilin A/HIV-1 CA N-terminal domain (1-146) O-type chimera Complex.
Class: Isomerase/Viral protein
Keywords: capsid, hiv-1, cyclophilin a, isomerase, rotamase
Deposited on 2002-07-28, released 2003-05-27
The last revision prior to the SCOP 1.75 freeze date was dated 2003-05-27, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.17
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cyclophilin a
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1m9da_
  • Chain 'B':
    Compound: cyclophilin a
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1m9db_
  • Chain 'C':
    Compound: hiv-1 capsid
    Species: Human immunodeficiency virus 1
    Gene: CA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497 (0-145)
      • engineered (82)
      • engineered (85-87)
      • engineered (90-91)
      • engineered (95)
      • see remark 999 (119)
    Domains in SCOP 1.75: d1m9dc_
  • Chain 'D':
    Compound: hiv-1 capsid
    Species: Human immunodeficiency virus 1
    Gene: CA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497 (0-145)
      • engineered (82)
      • engineered (85-87)
      • engineered (90-91)
      • engineered (95)
      • see remark 999 (119)
    Domains in SCOP 1.75: d1m9dd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1m9dA (A:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1m9dB (B:)
mvnptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgf
mcqggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictakte
wldgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle

    Sequence, based on observed residues (ATOM records): (download) 
    >1m9dB (B:)
nptvffdiavdgeplgrvsfelfadkvpktaenfralstgekgfgykgscfhriipgfmc
qggdftrhngtggksiygekfedenfilkhtgpgilsmanagpntngsqffictaktewl
dgkhvvfgkvkegmniveamerfgsrngktskkitiadcgqle

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1m9dC (C:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrthppamgplppgqireprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmys

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1m9dD (D:)
pivqnlqgqmvhqaisprtlnawvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrthppamgplppgqireprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmys