PDB entry 1m6u

View 1m6u on RCSB PDB site
Description: Crystal Structure of a Novel DNA-binding domain from Ndt80, a Transcriptional Activator Required for Meiosis in Yeast
Class: transcription activator
Keywords: transcription activator, yeast protein, DNA-binding, meiosis
Deposited on 2002-07-17, released 2002-11-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.226
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NDT80 protein
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NDT80
    Database cross-references and differences (RAF-indexed):
    • Uniprot P38830
      • see remark 999 (154)
      • see remark 999 (166)
      • see remark 999 (208)
    Domains in SCOPe 2.08: d1m6ua_
  • Chain 'B':
    Compound: NDT80 protein
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: NDT80
    Database cross-references and differences (RAF-indexed):
    • Uniprot P38830
      • see remark 999 (154)
      • see remark 999 (166)
    Domains in SCOPe 2.08: d1m6ub_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1m6uA (A:)
    stlqfkvgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykrnyftlvs
    tfetancdldtflkssfdllvedssvesrlrvqyfaikikaknddddteinlvqhtakrd
    kgpqfcpsvcplvpsplpkhqiireasnvrnitktkkydstfylhrnhvnyeeygvdsll
    fsypedsiqkvaryervqfassisvkkpfqqnkhfslhvilgavvdpdtfhgenpgipyd
    elalkngskgmfvylqemktppliirgrspsn
    

    Sequence, based on observed residues (ATOM records): (download)
    >1m6uA (A:)
    fkvgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykrnyftlvstfet
    ancdldtflkssfdllvedssvesrlrvqyfaikikaknddddteinlvqhtakrdkgpq
    fcpsvcplvpsplpkhqiireasnvrnitktkkydstfylhrnhvnyeeygvdsllfsyp
    edsiqkvaryervqfassisvkkpfqqnkhfslhvilgavvdpdtfhgenpgipydelal
    kngskgmfvylqemktppliirgrs
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1m6uB (B:)
    stlqfkvgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykrnyftlvs
    tfetancdldtflkssfdllvedssvesrlrvqyfaikikaknddddteinlvqhtakrd
    kgpqfcpsvcplvpsplpkhqiireasnvrnitktkkydstfylhrnhvnyeeygvdsll
    fsypedsiqkvaryervqfassisvkkpfqqnkhfslhvilgavvdpdtfhgenpgipyd
    elalkngskgmfvylqemktppliirgrspsn
    

    Sequence, based on observed residues (ATOM records): (download)
    >1m6uB (B:)
    vgppfelvrdycpvveshtgrtldlriipridrgfdhideewvgykrnyftlvstfetan
    cdldtflkssfdllvedssvesrlrvqyfaikikaknddddteinlvqhtakrdkgpqfc
    psvcplvpsplpkhqiireasnvrnitktkkydstfylhrnhvnyeeygvdsllfsyped
    siqkvaryervqfassikhfslhvilgavvdpdtfhgenpgipydelalkngskgmfvyl
    qemktpplii