PDB entry 1m3i

View 1m3i on RCSB PDB site
Description: Perfringolysin O, new crystal form
Class: toxin
Keywords: pore forming toxin
Deposited on 2002-06-28, released 2004-02-03
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.233
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: perfringolysin O
    Species: Clostridium perfringens [TaxId:1502]
    Gene: pfoa
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19995 (Start-470)
      • see remark 999 (84)
    Domains in SCOPe 2.05: d1m3ia_
  • Chain 'B':
    Compound: perfringolysin O
    Species: Clostridium perfringens [TaxId:1502]
    Gene: pfoa
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19995 (Start-470)
      • see remark 999 (84)
    Domains in SCOPe 2.05: d1m3ib_
  • Chain 'C':
    Compound: perfringolysin O
    Species: Clostridium perfringens [TaxId:1502]
    Gene: pfoa
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19995 (Start-470)
      • see remark 999 (84)
    Domains in SCOPe 2.05: d1m3ic_
  • Chain 'D':
    Compound: perfringolysin O
    Species: Clostridium perfringens [TaxId:1502]
    Gene: pfoa
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19995 (Start-470)
      • see remark 999 (84)
    Domains in SCOPe 2.05: d1m3id_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1m3iA (A:)
ditdknqsidsgisslsynrnevlasngdkiesfvpkegkkagnkfivverqkrslttsp
vdisiidsvndrtypgalqladkalvenrptilmvkrkpininidlpglkgensikvddp
tygkvsgaidelvskwnekyssthtlpartqysesmvysksqissalnvnakvlenslgv
dfnavannekkvmilaykqifytvsadlpknpsdlfddsvtfndlkqkgvsneapplmvs
nvaygrtiyvklettssskdvqaafkalikntdiknsqqykdiyenssftavvlggdaqe
hnkvvtkdfdeirkvikdnatfstknpaypisytsvflkdnsvaavhnktdyiettstey
skgkinldhsgayvaqfevawdevsydkegnevlthktwdgnyqdktahystvipleana
rnirikarectglawewwrdviseydvpltnninvsiwgttlypgssityn

    Sequence, based on observed residues (ATOM records): (download) 
    >1m3iA (A:)
qsidsgisslsynrnevlasngdkiesfvpkegkkagnkfivverqkrslttspvdisii
dsvndrtypgalqladkalvenrptilmvkrkpininidlpglkgensikvddptygkvs
gaidelvskwnekyssthtlpartqysesmvysksqissalnvnakvlenslgvdfnava
nnekkvmilaykqifytvsadlpknpsdlfddsvtfndlkqkgvsneapplmvsnvaygr
tiyvklettssskdvqaafkalikntdiknsqqykdiyenssftavvlggdaqehnkvvt
kdfdeirkvikdnatfstknpaypisytsvflkdnsvaavhnktdyiettsteyskgkin
ldhsgayvaqfevawdevsydkegnevlthktwdgnyqdktahystvipleanarnirik
arectglawewwrdviseydvpltnninvsiwgttlypgssityn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1m3iB (B:)
ditdknqsidsgisslsynrnevlasngdkiesfvpkegkkagnkfivverqkrslttsp
vdisiidsvndrtypgalqladkalvenrptilmvkrkpininidlpglkgensikvddp
tygkvsgaidelvskwnekyssthtlpartqysesmvysksqissalnvnakvlenslgv
dfnavannekkvmilaykqifytvsadlpknpsdlfddsvtfndlkqkgvsneapplmvs
nvaygrtiyvklettssskdvqaafkalikntdiknsqqykdiyenssftavvlggdaqe
hnkvvtkdfdeirkvikdnatfstknpaypisytsvflkdnsvaavhnktdyiettstey
skgkinldhsgayvaqfevawdevsydkegnevlthktwdgnyqdktahystvipleana
rnirikarectglawewwrdviseydvpltnninvsiwgttlypgssityn

    Sequence, based on observed residues (ATOM records): (download) 
    >1m3iB (B:)
qsidsgisslsynrnevlasngdkiesfvpkegkkagnkfivverqkrslttspvdisii
dsvndrtypgalqladkalvenrptilmvkrkpininidlpglkgensikvddptygkvs
gaidelvskwnekyssthtlpartqysesmvysksqissalnvnakvlenslgvdfnava
nnekkvmilaykqifytvsadlpknpsdlfddsvtfndlkqkgvsneapplmvsnvaygr
tiyvklettssskdvqaafkalikntdiknsqqykdiyenssftavvlggdaqehnkvvt
kdfdeirkvikdnatfstknpaypisytsvflkdnsvaavhnktdyiettsteyskgkin
ldhsgayvaqfevawdevsydkegnevlthktwdgnyqdktahystvipleanarnirik
arectglawewwrdviseydvpltnninvsiwgttlypgssityn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1m3iC (C:)
ditdknqsidsgisslsynrnevlasngdkiesfvpkegkkagnkfivverqkrslttsp
vdisiidsvndrtypgalqladkalvenrptilmvkrkpininidlpglkgensikvddp
tygkvsgaidelvskwnekyssthtlpartqysesmvysksqissalnvnakvlenslgv
dfnavannekkvmilaykqifytvsadlpknpsdlfddsvtfndlkqkgvsneapplmvs
nvaygrtiyvklettssskdvqaafkalikntdiknsqqykdiyenssftavvlggdaqe
hnkvvtkdfdeirkvikdnatfstknpaypisytsvflkdnsvaavhnktdyiettstey
skgkinldhsgayvaqfevawdevsydkegnevlthktwdgnyqdktahystvipleana
rnirikarectglawewwrdviseydvpltnninvsiwgttlypgssityn

    Sequence, based on observed residues (ATOM records): (download) 
    >1m3iC (C:)
qsidsgisslsynrnevlasngdkiesfvpkegkkagnkfivverqkrslttspvdisii
dsvndrtypgalqladkalvenrptilmvkrkpininidlpglkgensikvddptygkvs
gaidelvskwnekyssthtlpartqysesmvysksqissalnvnakvlenslgvdfnava
nnekkvmilaykqifytvsadlpknpsdlfddsvtfndlkqkgvsneapplmvsnvaygr
tiyvklettssskdvqaafkalikntdiknsqqykdiyenssftavvlggdaqehnkvvt
kdfdeirkvikdnatfstknpaypisytsvflkdnsvaavhnktdyiettsteyskgkin
ldhsgayvaqfevawdevsydkegnevlthktwdgnyqdktahystvipleanarnirik
arectglawewwrdviseydvpltnninvsiwgttlypgssityn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1m3iD (D:)
ditdknqsidsgisslsynrnevlasngdkiesfvpkegkkagnkfivverqkrslttsp
vdisiidsvndrtypgalqladkalvenrptilmvkrkpininidlpglkgensikvddp
tygkvsgaidelvskwnekyssthtlpartqysesmvysksqissalnvnakvlenslgv
dfnavannekkvmilaykqifytvsadlpknpsdlfddsvtfndlkqkgvsneapplmvs
nvaygrtiyvklettssskdvqaafkalikntdiknsqqykdiyenssftavvlggdaqe
hnkvvtkdfdeirkvikdnatfstknpaypisytsvflkdnsvaavhnktdyiettstey
skgkinldhsgayvaqfevawdevsydkegnevlthktwdgnyqdktahystvipleana
rnirikarectglawewwrdviseydvpltnninvsiwgttlypgssityn

    Sequence, based on observed residues (ATOM records): (download) 
    >1m3iD (D:)
qsidsgisslsynrnevlasngdkiesfvpkegkkagnkfivverqkrslttspvdisii
dsvndrtypgalqladkalvenrptilmvkrkpininidlpglkgensikvddptygkvs
gaidelvskwnekyssthtlpartqysesmvysksqissalnvnakvlenslgvdfnava
nnekkvmilaykqifytvsadlpknpsdlfddsvtfndlkqkgvsneapplmvsnvaygr
tiyvklettssskdvqaafkalikntdiknsqqykdiyenssftavvlggdaqehnkvvt
kdfdeirkvikdnatfstknpaypisytsvflkdnsvaavhnktdyiettsteyskgkin
ldhsgayvaqfevawdevsydkegnevlthktwdgnyqdktahystvipleanarnirik
arectglawewwrdviseydvpltnninvsiwgttlypgssityn