PDB entry 1m0f

View 1m0f on RCSB PDB site
Description: Structural Studies of Bacteriophage alpha3 Assembly, Cryo-electron microscopy
Class: virus
Keywords: Bacteriophage, Cryo Electron Microscopy, Procapsid, morphogenesis, microviridae, assembly, Icosahedral virus, Virus
Deposited on 2002-06-12, released 2002-12-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-07-18, with a file datestamp of 2018-07-13.
Experiment type: EM
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Scaffolding protein D
    Species: Enterobacteria phage alpha3 [TaxId:10849]
    Database cross-references and differences (RAF-indexed):
    • PDB 1M0F
    Domains in SCOPe 2.08: d1m0f1_
  • Chain '2':
    Compound: Scaffolding protein D
    Species: Enterobacteria phage alpha3 [TaxId:10849]
    Database cross-references and differences (RAF-indexed):
    • PDB 1M0F
    Domains in SCOPe 2.08: d1m0f2_
  • Chain '3':
    Compound: Scaffolding protein D
    Species: Enterobacteria phage alpha3 [TaxId:10849]
    Database cross-references and differences (RAF-indexed):
    • PDB 1M0F
    Domains in SCOPe 2.08: d1m0f3_
  • Chain '4':
    Compound: Scaffolding protein D
    Species: Enterobacteria phage alpha3 [TaxId:10849]
    Database cross-references and differences (RAF-indexed):
    • PDB 1M0F (Start-151)
    Domains in SCOPe 2.08: d1m0f4_
  • Chain 'B':
    Compound: Scaffolding Protein B
    Species: Enterobacteria phage alpha3 [TaxId:10849]
    Database cross-references and differences (RAF-indexed):
    • PDB 1M0F (0-67)
    Domains in SCOPe 2.08: d1m0fb_
  • Chain 'F':
    Compound: Capsid Protein F
    Species: Enterobacteria phage alpha3 [TaxId:10849]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08767 (Start-430)
      • see remark 999 (159)
    Domains in SCOPe 2.08: d1m0ff_
  • Chain 'G':
    Compound: Major Spike Protein G
    Species: Enterobacteria phage alpha3 [TaxId:10849]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1m0fg_

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >1m0f1 (1:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm

    Sequence, based on observed residues (ATOM records): (download) 
    >1m0f1 (1:)
eqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtldf
vgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaftl
rvragntdvltdaeenvrqklra

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >1m0f2 (2:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm

    Sequence, based on observed residues (ATOM records): (download) 
    >1m0f2 (2:)
eqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtldf
vgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaftl
rvragntdvltdaee

  • Chain '3':
    Sequence, based on SEQRES records: (download) 
    >1m0f3 (3:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm

    Sequence, based on observed residues (ATOM records): (download) 
    >1m0f3 (3:)
teqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtld
fvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaft
lrvragntdvltdaeenvrq

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1m0f4 (4:)
msqvteqsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvy
gtldfvgyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaael
faftlrvragntdvltdaeenvrqklraegvm

    Sequence, based on observed residues (ATOM records): (download) 
    >1m0f4 (4:)
qsvrfqtalasikliqasavldlteddfdfltsnkvwiatdrsrarrcveacvygtldfv
gyprfpapvefiaaviayyvhpvniqtaclimegaefteniingverpvkaaelfaftlr
vragntdvltdaeenvrqklraegvm

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1m0fB (B:)
meqltknqrkkrdeieagksycsrrfggatcddksaqiyarfdkndwriqpaefyrfhda
evntfgyf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1m0fF (F:)
msnvqtsaereivdlshlafdcgmlgrlktvswtpviagdsfeldavgalrlsplrrgla
idskvdfftfyiphrhvygdqwiqfmrdgvnaqplpsvtcnrypdhagyvgtivpannri
pkflhqsylniynnyfrapwmperteanpsnlneddarygfrcchlkniwsaplppetkl
aeemgiesnsidimglqaayaqlhteqertyfmqryrdvissfggstsydadnrpllvmh
tdfwasgydvdgtdqsslgqfsgrvqqtfkhsvprffvpehgvmmtlalirfppispleh
hylagksqltytdlagdpalignlppreisyrdlfrdgrsgikikvaesiwyrthpdyvn
fkyhdlhgfpflddapgtstgdnlqeailvrhqdydacfqsqqllqwnkqarynvsvyrh
mptvrdsimts

    Sequence, based on observed residues (ATOM records): (download) 
    >1m0fF (F:)
reivdlshlafdcgmlgrlktvswtpviagdsfeldavgalrlsplrrglaidskvdfft
fyiphrhvygdqwiqfmrdgvnaqplpsvtcnrypdhagyvgtivpannripkflhqsyl
niynnyfrapwmperteanpsnlneddarygfrcchlkniwnrpllvmhtdfwasgydvd
gtdqsslgqfsgrvqqtfkhsvprffvpehgvmmtlalirfppisplehhylagksqlty
tdlagdpalignlppreisyrdlfrdgrsgikikvaesiwyrthpdyvnfkyhdlhgfpf
lddapgtstgdnlqeailvrhqdydacfqsqqllqwnkqarynvsvyrhmptvrdsimts

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1m0fG (G:)
myqnfvtkhdtaiqtsrfsvtgnvipaaptgnipvinggsitaeravvnlyanmnvstss
dgsfivamkvdtsptdpncvisagvnlsfagtsypivgivrfesaseqptsiagsevehy
piemsvgsggvcsardcatvdihprtsgnnvfvgvicssakwtsgrvigtiattqvihey
qvlqplk