PDB entry 1m05

View 1m05 on RCSB PDB site
Description: HLA B8 in complex with an Epstein Barr Virus determinant
Class: immune system
Keywords: MHC class I, HLA B8, Epstein Barr virus
Deposited on 2002-06-11, released 2003-09-02
The last revision prior to the SCOP 1.73 freeze date was dated 2003-09-02, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.242
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HLA class I histocompatibility antigen, B-8 B*0801 alpha chain
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1m05a1, d1m05a2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1m05b_
  • Chain 'C':
    Compound: HLA class I histocompatibility antigen, B-8 B*0801 alpha chain
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1m05c1, d1m05c2
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1m05d_
  • Chain 'E':
    Compound: EBNA-3 nuclear protein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12977 (0-8)
      • see remark 999 (8)
  • Chain 'F':
    Compound: EBNA-3 nuclear protein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12977 (0-8)
      • see remark 999 (8)
  • Heterogens: CD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1m05A (A:)
    gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaaspreeprapwieqegpeyw
    drntqifktntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydg
    kdyialnedlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtle
    radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrweps
    

    Sequence, based on observed residues (ATOM records): (download)
    >1m05A (A:)
    gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaapwieqegpeywdrntqifk
    tntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydgkdyialne
    dlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtleradppkth
    vthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrtfqkwaavv
    vpsgeeqrytchvqheglpkpltlrweps
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1m05B (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1m05C (C:)
    gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaaspreeprapwieqegpeyw
    drntqifktntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydg
    kdyialnedlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtle
    radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrweps
    

    Sequence, based on observed residues (ATOM records): (download)
    >1m05C (C:)
    gshsmryfdtamsrpgrgeprfisvgyvddtqfvrfdsdaapwieqegpeywdrntqifk
    tntqtdreslrnlrgyynqseagshtlqsmygcdvgpdgrllrghnqyaydgkdyialne
    dlrswtaadtaaqitqrkweaarvaeqdraylegtcvewlrrylengkdtleradppkth
    vthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrtfqkwaavv
    vpsgeeqrytchvqheglpkpltlrweps
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1m05D (D:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.