PDB entry 1lvw

View 1lvw on RCSB PDB site
Description: Crystal structure of glucose-1-phosphate thymidylyltransferase, RmlA, complex with dTDP
Class: transferase
Keywords: protein nucleotide complex, nucleotide binding fold, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, TRANSFERASE
Deposited on 2002-05-29, released 2003-07-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.187
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glucose-1-phosphate thymidylyltransferase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: RMLA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O27819 (3-294)
      • cloning artifact (0-2)
    Domains in SCOPe 2.08: d1lvwa1, d1lvwa2
  • Chain 'B':
    Compound: glucose-1-phosphate thymidylyltransferase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: RMLA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O27819 (3-End)
      • cloning artifact (2)
    Domains in SCOPe 2.08: d1lvwb1, d1lvwb2
  • Chain 'C':
    Compound: glucose-1-phosphate thymidylyltransferase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: RMLA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O27819 (3-294)
      • cloning artifact (1-2)
    Domains in SCOPe 2.08: d1lvwc1, d1lvwc2
  • Chain 'D':
    Compound: glucose-1-phosphate thymidylyltransferase
    Species: Methanothermobacter thermautotrophicus [TaxId:145262]
    Gene: RMLA
    Database cross-references and differences (RAF-indexed):
    • Uniprot O27819 (3-294)
      • cloning artifact (2)
    Domains in SCOPe 2.08: d1lvwd1, d1lvwd2
  • Heterogens: CL, SO4, TYD, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1lvwA (A:)
gahmkgivlaggsgtrlypitravskqllpiydkpmiyyplsvlmlagirdiliistprd
lplyrdllgdgsqfgvrfsyrvqeeprgiadafivgkdfigdskvalvlgdnvfyghrfs
eilrraasledgavifgyyvrdprpfgvvefdsegrvisieekpsrpksnyvvpglyfyd
nqvveiarriepsdrgeleitsvneeylrmgklrvelmgrgmawldtgthdglleassfi
etiqkrqgfyiacleeiaynngwitredvlemaeklektdygkylrdlaegnfhg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1lvwB (B:)
gahmkgivlaggsgtrlypitravskqllpiydkpmiyyplsvlmlagirdiliistprd
lplyrdllgdgsqfgvrfsyrvqeeprgiadafivgkdfigdskvalvlgdnvfyghrfs
eilrraasledgavifgyyvrdprpfgvvefdsegrvisieekpsrpksnyvvpglyfyd
nqvveiarriepsdrgeleitsvneeylrmgklrvelmgrgmawldtgthdglleassfi
etiqkrqgfyiacleeiaynngwitredvlemaeklektdygkylrdlaegnfhg

    Sequence, based on observed residues (ATOM records): (download) 
    >1lvwB (B:)
hmkgivlaggsgtrlypitravskqllpiydkpmiyyplsvlmlagirdiliistprdlp
lyrdllgdgsqfgvrfsyrvqeeprgiadafivgkdfigdskvalvlgdnvfyghrfsei
lrraasledgavifgyyvrdprpfgvvefdsegrvisieekpsrpksnyvvpglyfydnq
vveiarriepsdrgeleitsvneeylrmgklrvelmgrgmawldtgthdglleassfiet
iqkrqgfyiacleeiaynngwitredvlemaeklektdygkylrdlaegnfh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1lvwC (C:)
gahmkgivlaggsgtrlypitravskqllpiydkpmiyyplsvlmlagirdiliistprd
lplyrdllgdgsqfgvrfsyrvqeeprgiadafivgkdfigdskvalvlgdnvfyghrfs
eilrraasledgavifgyyvrdprpfgvvefdsegrvisieekpsrpksnyvvpglyfyd
nqvveiarriepsdrgeleitsvneeylrmgklrvelmgrgmawldtgthdglleassfi
etiqkrqgfyiacleeiaynngwitredvlemaeklektdygkylrdlaegnfhg

    Sequence, based on observed residues (ATOM records): (download) 
    >1lvwC (C:)
ahmkgivlaggtrlypitravskqllpiydkpmiyyplsvlmlagirdiliistprdlpl
yrdllgdgsqfgvrfsyrvqeeprgiadafivgkdfigdskvalvlgdnvfyghrfseil
rraasledgavifgyyvrdprpfgvvefdsegrvisieekpsrpksnyvvpglyfydnqv
veiarriepsdrgeleitsvneeylrmgklrvelmgrgmawldtgthdglleassfieti
qkrqgfyiacleeiaynngwitredvlemaeklektdygkylrdlaegnfhg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1lvwD (D:)
gahmkgivlaggsgtrlypitravskqllpiydkpmiyyplsvlmlagirdiliistprd
lplyrdllgdgsqfgvrfsyrvqeeprgiadafivgkdfigdskvalvlgdnvfyghrfs
eilrraasledgavifgyyvrdprpfgvvefdsegrvisieekpsrpksnyvvpglyfyd
nqvveiarriepsdrgeleitsvneeylrmgklrvelmgrgmawldtgthdglleassfi
etiqkrqgfyiacleeiaynngwitredvlemaeklektdygkylrdlaegnfhg

    Sequence, based on observed residues (ATOM records): (download) 
    >1lvwD (D:)
hmkgivlaggtrlypitravskqllpiydkpmiyyplsvlmlagirdiliistprdlply
rdllgdgsqfgvrfsyrvqeeprgiadafivgkdfigdskvalvlgdnvfyghrfseilr
raasledgavifgyyvrdprpfgvvefdsegrvisieekpsrpksnyvvpglyfydnqvv
eiarriepsdrgeleitsvneeylrmgklrvelmgrgmawldtgthdglleassfietiq
krqgfyiacleeiaynngwitredvlemaeklektdygkylrdlaegnfhg