PDB entry 1lvb

View 1lvb on RCSB PDB site
Description: catalytically inactive tobacco etch virus protease complexed with substrate
Class: Viral protein
Keywords: Beta Barrel, Protein-Peptide Complex, Chymotrypsin-like Cystein Protease, Viral protein
Deposited on 2002-05-28, released 2002-11-27
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.236
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: catalytic domain of the nuclear inclusion protein a (nia)
    Species: Tobacco etch virus [TaxId:12227]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04517
      • modified residue (88)
      • modified residue (93)
      • modified residue (127)
      • modified residue (130)
      • engineered (157)
      • modified residue (193)
      • modified residue (224)
    Domains in SCOPe 2.06: d1lvba_
  • Chain 'B':
    Compound: catalytic domain of the nuclear inclusion protein a (nia)
    Species: Tobacco etch virus [TaxId:12227]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04517
      • modified residue (88)
      • modified residue (93)
      • modified residue (127)
      • modified residue (130)
      • engineered (157)
      • modified residue (193)
      • modified residue (224)
    Domains in SCOPe 2.06: d1lvbb_
  • Chain 'C':
    Compound: oligopeptide substrate for the protease
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: oligopeptide substrate for the protease
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1lvbA (A:)
shhhhhhgeslfkgprdynpisstichltnesdghttslygigfgpfiitnkhlfrrnng
tllvqslhgvfkvkntttlqqhlidgrdmiiirmpkdfppfpqklkfrepqreericlvt
tnfqtksmssmvsdtsctfpssdgifwkhwiqtkdgqagsplvstrdgfivgihsasnft
ntnnyftsvpknfmelltnqeaqqwvsgwrlnadsvlwgghkvfmskpeepfqpvkeatq
lmn

    Sequence, based on observed residues (ATOM records): (download) 
    >1lvbA (A:)
prdynpisstichltnesdghttslygigfgpfiitnkhlfrrnngtllvqslhgvfkvk
ntttlqqhlidgrdmiiirmpkdfppfpqklkfrepqreericlvttnfqtksmssmvsd
tsctfpssdgifwkhwiqtkdgqagsplvstrdgfivgihsasnftntnnyftsvpknfm
elltnqeaqqwvsgwrlnadsvlwgghkvfmskp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1lvbB (B:)
shhhhhhgeslfkgprdynpisstichltnesdghttslygigfgpfiitnkhlfrrnng
tllvqslhgvfkvkntttlqqhlidgrdmiiirmpkdfppfpqklkfrepqreericlvt
tnfqtksmssmvsdtsctfpssdgifwkhwiqtkdgqagsplvstrdgfivgihsasnft
ntnnyftsvpknfmelltnqeaqqwvsgwrlnadsvlwgghkvfmskpeepfqpvkeatq
lmn

    Sequence, based on observed residues (ATOM records): (download) 
    >1lvbB (B:)
prdynpisstichltnesdghttslygigfgpfiitnkhlfrrnngtllvqslhgvfkvk
ntttlqqhlidgrdmiiirmpkdfppfpqklkfrepqreericlvttnfqtksmssmvsd
tsctfpssdgifwkhwiqtkdgqagsplvstrdgfivgihsasnftntnnyftsvpknfm
elltnqeaqqwvsgwrlnadsvlwgghkvfmskp

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.