PDB entry 1lv5
View 1lv5 on RCSB PDB site
Description: Crystal Structure of the Closed Conformation of Bacillus DNA Polymerase I Fragment Bound to DNA and dCTP
Class: transferase/DNA
Keywords: DNA polymerase I, DNA replication, klenow fragment, protein-DNA-dNTP complex, closed conformation, transferase/DNA complex
Deposited on
2002-05-24, released
2003-03-25
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.218
AEROSPACI score: 0.4
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase I
Species: Geobacillus stearothermophilus [TaxId:1422]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1lv5a1, d1lv5a2 - Chain 'B':
Compound: DNA polymerase I
Species: Geobacillus stearothermophilus [TaxId:1422]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1lv5b1, d1lv5b2 - Chain 'C':
Compound: 5'-d(*gp*gp*ap*tp*cp*ap*gp*cp*gp*a)-3'
- Chain 'D':
Compound: 5'-d(*ap*cp*gp*tp*cp*gp*cp*tp*gp*ap*tp*cp*cp*g)-3'
- Chain 'E':
Compound: 5'-d(*gp*gp*ap*tp*cp*ap*gp*cp*gp*a)-3'
- Chain 'F':
Compound: 5'-d(*ap*cp*gp*tp*cp*gp*cp*tp*gp*ap*tp*cp*cp*g)-3'
- Heterogens: MN, MG, SO4, DCP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1lv5A (A:)
akmaftladrvteemladkaalvvevveenyhaapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
pdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1lv5B (B:)
akmaftladrvteemladkaalvvevveenyhaapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrneqdrllve
leqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefninspkqlgv
ilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyiegllkvvr
pdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwlifaadysq
ielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakavnfgivygi
sdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllhrrrylpdi
tsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqvhdelilea
pkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.