PDB entry 1lod

View 1lod on RCSB PDB site
Description: interaction of a legume lectin with two components of the bacterial cell wall
Class: lectin
Keywords: lectin
Deposited on 1993-01-27, released 1994-04-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: legume isolectin I (alpha chain)
    Species: Lathyrus ochrus [TaxId:3858]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04122 (0-End)
      • conflict (152)
    Domains in SCOPe 2.08: d1lod.1
  • Chain 'B':
    Compound: legume isolectin I (beta chain)
    Species: Lathyrus ochrus [TaxId:3858]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12306 (0-End)
      • conflict (40)
    Domains in SCOPe 2.08: d1lod.1
  • Chain 'C':
    Compound: legume isolectin I (alpha chain)
    Species: Lathyrus ochrus [TaxId:3858]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04122 (0-End)
      • conflict (152)
    Domains in SCOPe 2.08: d1lod.2
  • Chain 'D':
    Compound: legume isolectin I (beta chain)
    Species: Lathyrus ochrus [TaxId:3858]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12306
      • conflict (40)
    Domains in SCOPe 2.08: d1lod.2
  • Chain 'E':
    Compound: legume isolectin I (alpha chain)
    Species: Lathyrus ochrus [TaxId:3858]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04122 (0-End)
      • conflict (152)
    Domains in SCOPe 2.08: d1lod.3
  • Chain 'F':
    Compound: legume isolectin I (beta chain)
    Species: Lathyrus ochrus [TaxId:3858]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12306 (0-End)
      • conflict (40)
    Domains in SCOPe 2.08: d1lod.3
  • Chain 'G':
    Compound: legume isolectin I (alpha chain)
    Species: Lathyrus ochrus [TaxId:3858]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04122 (0-End)
      • conflict (152)
    Domains in SCOPe 2.08: d1lod.4
  • Chain 'H':
    Compound: legume isolectin I (beta chain)
    Species: Lathyrus ochrus [TaxId:3858]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12306
      • conflict (40)
    Domains in SCOPe 2.08: d1lod.4
  • Heterogens: CA, MN, MUR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1lodA (A:)
tettsfsitkfgpdqqnlifqgdgyttkerltltkavrntvgralysspihiwdsktgnv
anfvtsftfvidapnsynvadgftffiapvdtkpqtgggylgvfnskdydktsqtvavef
dtfyntawdpsngdrhigidvnsiksintkswalqngkeanvviafnaatnvltvsltyp
n

    Sequence, based on observed residues (ATOM records): (download) 
    >1lodA (A:)
tettsfsitkfgpdqqnlifqgdgyttkerltltkavrntvgralysspihiwdsktgnv
anfvtsftfvidapnsynvadgftffiapvdtkpqtgggylgvfnskdydktsqtvavef
dtfyntawdpsngdrhigidvnsiksintkswalqngkeanvviafnaatnvltvsltyp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1lodB (B:)
etsytlnevvplkefvpewvrigfsattgaefaahevlswyfhselagtsss

    Sequence, based on observed residues (ATOM records): (download) 
    >1lodB (B:)
etsytlnevvplkefvpewvrigfsattgaefaahevlswyfhsela

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1lodC (C:)
tettsfsitkfgpdqqnlifqgdgyttkerltltkavrntvgralysspihiwdsktgnv
anfvtsftfvidapnsynvadgftffiapvdtkpqtgggylgvfnskdydktsqtvavef
dtfyntawdpsngdrhigidvnsiksintkswalqngkeanvviafnaatnvltvsltyp
n

    Sequence, based on observed residues (ATOM records): (download) 
    >1lodC (C:)
tettsfsitkfgpdqqnlifqgdgyttkerltltkavrntvgralysspihiwdsktgnv
anfvtsftfvidapnsynvadgftffiapvdtkpqtgggylgvfnskdydktsqtvavef
dtfyntawdpsngdrhigidvnsiksintkswalqngkeanvviafnaatnvltvsltyp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1lodD (D:)
etsytlnevvplkefvpewvrigfsattgaefaahevlswyfhselagtsss

    Sequence, based on observed residues (ATOM records): (download) 
    >1lodD (D:)
tsytlnevvplkefvpewvrigfsattgaefaahevlswyfhselag

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1lodE (E:)
tettsfsitkfgpdqqnlifqgdgyttkerltltkavrntvgralysspihiwdsktgnv
anfvtsftfvidapnsynvadgftffiapvdtkpqtgggylgvfnskdydktsqtvavef
dtfyntawdpsngdrhigidvnsiksintkswalqngkeanvviafnaatnvltvsltyp
n

    Sequence, based on observed residues (ATOM records): (download) 
    >1lodE (E:)
tettsfsitkfgpdqqnlifqgdgyttkerltltkavrntvgralysspihiwdsktgnv
anfvtsftfvidapnsynvadgftffiapvdtkpqtgggylgvfnskdydktsqtvavef
dtfyntawdpsngdrhigidvnsiksintkswalqngkeanvviafnaatnvltvsltyp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1lodF (F:)
etsytlnevvplkefvpewvrigfsattgaefaahevlswyfhselagtsss

    Sequence, based on observed residues (ATOM records): (download) 
    >1lodF (F:)
etsytlnevvplkefvpewvrigfsattgaefaahevlswyfhsela

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1lodG (G:)
tettsfsitkfgpdqqnlifqgdgyttkerltltkavrntvgralysspihiwdsktgnv
anfvtsftfvidapnsynvadgftffiapvdtkpqtgggylgvfnskdydktsqtvavef
dtfyntawdpsngdrhigidvnsiksintkswalqngkeanvviafnaatnvltvsltyp
n

    Sequence, based on observed residues (ATOM records): (download) 
    >1lodG (G:)
tettsfsitkfgpdqqnlifqgdgyttkerltltkavrntvgralysspihiwdsktgnv
anfvtsftfvidapnsynvadgftffiapvdtkpqtgggylgvfnskdydktsqtvavef
dtfyntawdpsngdrhigidvnsiksintkswalqngkeanvviafnaatnvltvsltyp

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1lodH (H:)
etsytlnevvplkefvpewvrigfsattgaefaahevlswyfhselagtsss

    Sequence, based on observed residues (ATOM records): (download) 
    >1lodH (H:)
tsytlnevvplkefvpewvrigfsattgaefaahevlswyfhselag