PDB entry 1lnu

View 1lnu on RCSB PDB site
Description: CRYSTAL STRUCTURE OF CLASS II MHC MOLECULE IAb BOUND TO EALPHA3K PEPTIDE
Class: sugar binding protein
Keywords: Protein-peptide complex, T cell receptor, antigen presentation, SUGAR BINDING PROTEIN
Deposited on 2002-05-03, released 2002-08-14
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.211
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: H-2 class II histocompatibility antigen, A-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1lnua1, d1lnua2
  • Chain 'B':
    Compound: H-2 class II histocompatibility antigen, A beta chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P14483 (28-216)
      • conflict (215)
    Domains in SCOPe 2.06: d1lnub1, d1lnub2
  • Chain 'C':
    Compound: H-2 class II histocompatibility antigen, A-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1lnuc1, d1lnuc2
  • Chain 'D':
    Compound: H-2 class II histocompatibility antigen, A beta chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P14483 (28-216)
      • conflict (215)
    Domains in SCOPe 2.06: d1lnud1, d1lnud2
  • Chain 'E':
    Compound: H-2 class II histocompatibility antigen, A-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1lnue1, d1lnue2
  • Chain 'F':
    Compound: H-2 class II histocompatibility antigen, A beta chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P14483 (28-216)
      • conflict (215)
    Domains in SCOPe 2.06: d1lnuf1, d1lnuf2
  • Chain 'G':
    Compound: H-2 class II histocompatibility antigen, A-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1lnug1, d1lnug2
  • Chain 'H':
    Compound: H-2 class II histocompatibility antigen, A beta chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P14483 (28-216)
      • conflict (215)
    Domains in SCOPe 2.06: d1lnuh1, d1lnuh2
  • Heterogens: NAG, NDG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1lnuA (A:)
    ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
    lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
    twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhwe
    pe
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1lnuB (B:)
    feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
    eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
    leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
    tfqvlvmlemtprrgevytchvehpslkspitvewka
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1lnuC (C:)
    ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
    lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
    twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhwe
    pe
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1lnuD (D:)
    feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
    eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
    leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
    tfqvlvmlemtprrgevytchvehpslkspitvewka
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1lnuE (E:)
    ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
    lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
    twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhwe
    pe
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1lnuF (F:)
    feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
    eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
    leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
    tfqvlvmlemtprrgevytchvehpslkspitvewka
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1lnuG (G:)
    ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
    lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
    twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhwe
    pe
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1lnuH (H:)
    feaqkakankavdggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
    eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
    leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
    tfqvlvmlemtprrgevytchvehpslkspitvewka