PDB entry 1lme

View 1lme on RCSB PDB site
Description: Crystal Structure of Peptide Deformylase from Thermotoga maritima
Class: hydrolase
Keywords: thermophile, PDF, peptide deformylase, metalloenzyme, deformylation, Structural Genomics, PSI, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, HYDROLASE
Deposited on 2002-05-01, released 2003-06-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.198
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Peptide deformylase
    Species: Thermotoga maritima [TaxId:2336]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P96113 (12-End)
      • see remark 999 (3-11)
      • modified residue (98)
    Domains in SCOPe 2.08: d1lmea1, d1lmea2
  • Chain 'B':
    Compound: Peptide deformylase
    Species: Thermotoga maritima [TaxId:2336]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P96113 (12-End)
      • see remark 999 (10-11)
      • modified residue (98)
    Domains in SCOPe 2.08: d1lmeb1, d1lmeb2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1lmeA (A:)
    mgsdkihhhhhhmyrirvfgdpvlrkrakpvtkfdenlkktiermietmyhydgvglaap
    qvgisqrffvmdvgngpvavinpeileidpetevaeegclsfpeifveierskrikvkyq
    ntrgeyveeelegyaarvfqhefdhlngvliidrispakrlllrkklmdiartvkr
    

    Sequence, based on observed residues (ATOM records): (download)
    >1lmeA (A:)
    dkihhhhhhmyrirvfgdpvlrkrakpvtkfdenlkktiermietmyhydgvglaapqvg
    isqrffvmdvgngpvavinpeileidpetevaeegclsfpeifveierskrikvkyqntr
    geyveeelegyaarvfqhefdhlngvliidrisp
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1lmeB (B:)
    mgsdkihhhhhhmyrirvfgdpvlrkrakpvtkfdenlkktiermietmyhydgvglaap
    qvgisqrffvmdvgngpvavinpeileidpetevaeegclsfpeifveierskrikvkyq
    ntrgeyveeelegyaarvfqhefdhlngvliidrispakrlllrkklmdiartvkr
    

    Sequence, based on observed residues (ATOM records): (download)
    >1lmeB (B:)
    hhmyrirvfgdpvlrkrakpvtkfdenlkktiermietmyhydgvglaapqvgisqrffv
    mdvgngpvavinpeileidpetevaeegclsfpeifveierskrikvkyqntrgeyveee
    legyaarvfqhefdhlngvliidrisp