PDB entry 1ld4

View 1ld4 on RCSB PDB site
Description: Placement of the Structural Proteins in Sindbis Virus
Class: Virus
Keywords: sindbis virus, alphavirus structure, cryo-electron microscopy, glycoprotein organization, nucleocapsid structure, transmembrane coiled coils, Icosahedral virus
Deposited on 2002-04-08, released 2002-11-04
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-06-09, with a file datestamp of 2009-06-05.
Experiment type: EM
Resolution: 11.4 Å
R-factor: N/A
AEROSPACI score: -0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: coat protein c
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4a_
  • Chain 'B':
    Compound: coat protein c
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4b_
  • Chain 'C':
    Compound: coat protein c
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4c_
  • Chain 'D':
    Compound: coat protein c
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4d_
  • Chain 'E':
    Compound: General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4e_
  • Chain 'F':
    Compound: General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4f_
  • Chain 'G':
    Compound: General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4g_
  • Chain 'H':
    Compound: General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4h_
  • Chain 'I':
    Compound: General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4i_
  • Chain 'J':
    Compound: General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4j_
  • Chain 'K':
    Compound: General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4k_
  • Chain 'L':
    Compound: General control protein GCN4
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4l_
  • Chain 'M':
    Compound: Spike glycoprotein E1
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4m_
  • Chain 'N':
    Compound: Spike glycoprotein E1
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4n_
  • Chain 'O':
    Compound: Spike glycoprotein E1
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4o_
  • Chain 'P':
    Compound: Spike glycoprotein E1
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1ld4p_
  • Heterogens: UNX

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ld4A (A:)
mnrgffnmlgrrpfpaptamwrprrrrqaapmparnglasqiqqlttavsalvigqatrp
qpprprppprqkkqapkqppkpkkpktqekkkkqpakpkpgkrqrmalkleadrlfdvkn
edgdvighalamegkvmkplhvkgtidhpvlsklkftkssaydmefaqlpvnmrseafty
tsehpegfynwhhgavqysggrftiprgvggrgdsgrpimdnsgrvvaivlggadegtrt
alsvvtwnskgktikttpegteew

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4A (A:)
rlfdvknedgdvighalamegkvmkplhvkgtidhpvlsklkftkssaydmefaqlpvnm
rseaftytsehpegfynwhhgavqysggrftiprgvggrgdsgrpimdnsgrvvaivlgg
adegtrtalsvvtwnskgktikttpegteew

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ld4B (B:)
mnrgffnmlgrrpfpaptamwrprrrrqaapmparnglasqiqqlttavsalvigqatrp
qpprprppprqkkqapkqppkpkkpktqekkkkqpakpkpgkrqrmalkleadrlfdvkn
edgdvighalamegkvmkplhvkgtidhpvlsklkftkssaydmefaqlpvnmrseafty
tsehpegfynwhhgavqysggrftiprgvggrgdsgrpimdnsgrvvaivlggadegtrt
alsvvtwnskgktikttpegteew

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4B (B:)
rlfdvknedgdvighalamegkvmkplhvkgtidhpvlsklkftkssaydmefaqlpvnm
rseaftytsehpegfynwhhgavqysggrftiprgvggrgdsgrpimdnsgrvvaivlgg
adegtrtalsvvtwnskgktikttpegteew

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ld4C (C:)
mnrgffnmlgrrpfpaptamwrprrrrqaapmparnglasqiqqlttavsalvigqatrp
qpprprppprqkkqapkqppkpkkpktqekkkkqpakpkpgkrqrmalkleadrlfdvkn
edgdvighalamegkvmkplhvkgtidhpvlsklkftkssaydmefaqlpvnmrseafty
tsehpegfynwhhgavqysggrftiprgvggrgdsgrpimdnsgrvvaivlggadegtrt
alsvvtwnskgktikttpegteew

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4C (C:)
rlfdvknedgdvighalamegkvmkplhvkgtidhpvlsklkftkssaydmefaqlpvnm
rseaftytsehpegfynwhhgavqysggrftiprgvggrgdsgrpimdnsgrvvaivlgg
adegtrtalsvvtwnskgktikttpegteew

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1ld4D (D:)
mnrgffnmlgrrpfpaptamwrprrrrqaapmparnglasqiqqlttavsalvigqatrp
qpprprppprqkkqapkqppkpkkpktqekkkkqpakpkpgkrqrmalkleadrlfdvkn
edgdvighalamegkvmkplhvkgtidhpvlsklkftkssaydmefaqlpvnmrseafty
tsehpegfynwhhgavqysggrftiprgvggrgdsgrpimdnsgrvvaivlggadegtrt
alsvvtwnskgktikttpegteew

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4D (D:)
rlfdvknedgdvighalamegkvmkplhvkgtidhpvlsklkftkssaydmefaqlpvnm
rseaftytsehpegfynwhhgavqysggrftiprgvggrgdsgrpimdnsgrvvaivlgg
adegtrtalsvvtwnskgktikttpegteew

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1ld4E (E:)
sdpaalkrarnteaarrsrarklqrmkqledkveellsknyhlenevarlkklvger

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4E (E:)
mkqledkveellsknyhlenevarlkkl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1ld4F (F:)
sdpaalkrarnteaarrsrarklqrmkqledkveellsknyhlenevarlkklvger

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4F (F:)
mkqledkveellsknyhlenevarlkkl

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1ld4G (G:)
sdpaalkrarnteaarrsrarklqrmkqledkveellsknyhlenevarlkklvger

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4G (G:)
mkqledkveellsknyhlenevarlkkl

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1ld4H (H:)
sdpaalkrarnteaarrsrarklqrmkqledkveellsknyhlenevarlkklvger

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4H (H:)
mkqledkveellsknyhlenevarlkkl

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1ld4I (I:)
sdpaalkrarnteaarrsrarklqrmkqledkveellsknyhlenevarlkklvger

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4I (I:)
mkqledkveellsknyhlenevarlkkl

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1ld4J (J:)
sdpaalkrarnteaarrsrarklqrmkqledkveellsknyhlenevarlkklvger

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4J (J:)
mkqledkveellsknyhlenevarlkkl

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1ld4K (K:)
sdpaalkrarnteaarrsrarklqrmkqledkveellsknyhlenevarlkklvger

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4K (K:)
mkqledkveellsknyhlenevarlkkl

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1ld4L (L:)
sdpaalkrarnteaarrsrarklqrmkqledkveellsknyhlenevarlkklvger

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4L (L:)
mkqledkveellsknyhlenevarlkkl

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1ld4M (M:)
yehattvpnvpqipykalveragyaplnleitvmssevlpstnqeyitckfttvvpspki
kccgslecqpaahadytckvfggvypfmwggaqcfcdsensqmseayvelsadcasdhaq
aikvhtaamkvglrivygnttsfldvyvngvtpgtskdlkviagpisasftpfdhkvvih
rglvynydfpeygamkpgafgdiqatsltskdliastdirllkpsaknvhvpytqassgf
emwknnsgrplqetapfgckiavnplravdcsygnipisidipnaafirtsdaplvstvk
cevsectysadfggmatlqyvsdregqcpvhshsstatlqestvhvlekgavtvhfstas
pqanfivslcgkkttcnaeckppadhivstphkndqefqaaisktswswlfalfggassl
liiglmifacsmmltstrr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4M (M:)
yehattvpnvpqipykalveragyaplnleitvmssevlpstnqeyitckfttvvpspki
kccgslecqpaahadytckvfggvypfmwggaqcfcdsensqmseayvelsadcasdhaq
aikvhtaamkvglrivygnttsfldvyvngvtpgtskdlkviagpisasftpfdhkvvih
rglvynydfpeygamkpgafgdiqatsltskdliastdirllkpsaknvhvpytqassgf
emwknnsgrplqetapfgckiavnplravdcsygnipisidipnaafirtsdaplvstvk
cevsectysmatlqyvsdregqcpvhshsstatlqestvhvtvhfstaspqanfivslcg
kkttcnaec

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1ld4N (N:)
yehattvpnvpqipykalveragyaplnleitvmssevlpstnqeyitckfttvvpspki
kccgslecqpaahadytckvfggvypfmwggaqcfcdsensqmseayvelsadcasdhaq
aikvhtaamkvglrivygnttsfldvyvngvtpgtskdlkviagpisasftpfdhkvvih
rglvynydfpeygamkpgafgdiqatsltskdliastdirllkpsaknvhvpytqassgf
emwknnsgrplqetapfgckiavnplravdcsygnipisidipnaafirtsdaplvstvk
cevsectysadfggmatlqyvsdregqcpvhshsstatlqestvhvlekgavtvhfstas
pqanfivslcgkkttcnaeckppadhivstphkndqefqaaisktswswlfalfggassl
liiglmifacsmmltstrr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4N (N:)
yehattvpnvpqipykalveragyaplnleitvmssevlpstnqeyitckfttvvpspki
kccgslecqpaahadytckvfggvypfmwggaqcfcdsensqmseayvelsadcasdhaq
aikvhtaamkvglrivygnttsfldvyvngvtpgtskdlkviagpisasftpfdhkvvih
rglvynydfpeygamkpgafgdiqatsltskdliastdirllkpsaknvhvpytqassgf
emwknnsgrplqetapfgckiavnplravdcsygnipisidipnaafirtsdaplvstvk
cevsectysmatlqyvsdregqcpvhshsstatlqestvhvtvhfstaspqanfivslcg
kkttcnaec

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >1ld4O (O:)
yehattvpnvpqipykalveragyaplnleitvmssevlpstnqeyitckfttvvpspki
kccgslecqpaahadytckvfggvypfmwggaqcfcdsensqmseayvelsadcasdhaq
aikvhtaamkvglrivygnttsfldvyvngvtpgtskdlkviagpisasftpfdhkvvih
rglvynydfpeygamkpgafgdiqatsltskdliastdirllkpsaknvhvpytqassgf
emwknnsgrplqetapfgckiavnplravdcsygnipisidipnaafirtsdaplvstvk
cevsectysadfggmatlqyvsdregqcpvhshsstatlqestvhvlekgavtvhfstas
pqanfivslcgkkttcnaeckppadhivstphkndqefqaaisktswswlfalfggassl
liiglmifacsmmltstrr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4O (O:)
yehattvpnvpqipykalveragyaplnleitvmssevlpstnqeyitckfttvvpspki
kccgslecqpaahadytckvfggvypfmwggaqcfcdsensqmseayvelsadcasdhaq
aikvhtaamkvglrivygnttsfldvyvngvtpgtskdlkviagpisasftpfdhkvvih
rglvynydfpeygamkpgafgdiqatsltskdliastdirllkpsaknvhvpytqassgf
emwknnsgrplqetapfgckiavnplravdcsygnipisidipnaafirtsdaplvstvk
cevsectysmatlqyvsdregqcpvhshsstatlqestvhvtvhfstaspqanfivslcg
kkttcnaec

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >1ld4P (P:)
yehattvpnvpqipykalveragyaplnleitvmssevlpstnqeyitckfttvvpspki
kccgslecqpaahadytckvfggvypfmwggaqcfcdsensqmseayvelsadcasdhaq
aikvhtaamkvglrivygnttsfldvyvngvtpgtskdlkviagpisasftpfdhkvvih
rglvynydfpeygamkpgafgdiqatsltskdliastdirllkpsaknvhvpytqassgf
emwknnsgrplqetapfgckiavnplravdcsygnipisidipnaafirtsdaplvstvk
cevsectysadfggmatlqyvsdregqcpvhshsstatlqestvhvlekgavtvhfstas
pqanfivslcgkkttcnaeckppadhivstphkndqefqaaisktswswlfalfggassl
liiglmifacsmmltstrr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ld4P (P:)
yehattvpnvpqipykalveragyaplnleitvmssevlpstnqeyitckfttvvpspki
kccgslecqpaahadytckvfggvypfmwggaqcfcdsensqmseayvelsadcasdhaq
aikvhtaamkvglrivygnttsfldvyvngvtpgtskdlkviagpisasftpfdhkvvih
rglvynydfpeygamkpgafgdiqatsltskdliastdirllkpsaknvhvpytqassgf
emwknnsgrplqetapfgckiavnplravdcsygnipisidipnaafirtsdaplvstvk
cevsectysmatlqyvsdregqcpvhshsstatlqestvhvtvhfstaspqanfivslcg
kkttcnaec