PDB entry 1laj
View 1laj on RCSB PDB site
Description: The Structure of Tomato Aspermy Virus by X-Ray Crystallography
Class: Virus/RNA
Keywords: anti-parallel beta sheets, jelly roll, T=3 icosahedral virus, protein-RNA complex, disulphide bridge, Icosahedral virus, Virus/RNA COMPLEX
Deposited on
2002-03-28, released
2002-11-27
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: 0.218
AEROSPACI score: 0.09
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: capsid protein
Species: Tomato aspermy virus [TaxId:12315]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1laja_ - Chain 'B':
Compound: capsid protein
Species: Tomato aspermy virus [TaxId:12315]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1lajb_ - Chain 'C':
Compound: capsid protein
Species: Tomato aspermy virus [TaxId:12315]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1lajc_ - Chain 'R':
Compound: 5'-r(*ap*ap*a)-3'
- Heterogens: PO4, MG
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1lajA (A:)
maqngtgggsrrprrgrrnnnnnnstardkallaltqqvnrlaniasssapslqhptfia
skkcragytytsldvrptrtekdksfgqrliipvpvseypkkkvscvqvrlnpspkfnst
iwvslrrldettlltsenvfklftdglavliyqhvptgiqpnnkitfdmsnvgaeigdmg
kyalivyskddvleademvihidiehqripsastlpv
Sequence, based on observed residues (ATOM records): (download)
>1lajA (A:)
niasssapslqhptfiaskkcragytytsldvrptrtekdksfgqrliipvpvseypkkk
vscvqvrlnpspkfnstiwvslrrldettlltsenvfklftdglavliyqhvptgiqpnn
kitfdmsnvgaeigdmgkyalivyskddvleademvihidiehqripsastlpv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1lajB (B:)
maqngtgggsrrprrgrrnnnnnnstardkallaltqqvnrlaniasssapslqhptfia
skkcragytytsldvrptrtekdksfgqrliipvpvseypkkkvscvqvrlnpspkfnst
iwvslrrldettlltsenvfklftdglavliyqhvptgiqpnnkitfdmsnvgaeigdmg
kyalivyskddvleademvihidiehqripsastlpv
Sequence, based on observed residues (ATOM records): (download)
>1lajB (B:)
tqqvnrlaniasssapslqhptfiaskkcragytytsldvrptrtekdksfgqrliipvp
vseypkkkvscvqvrlnpspkfnstiwvslrrldettlltsenvfklftdglavliyqhv
ptgiqpnnkitfdmsnvgaeigdmgkyalivyskddvleademvihidiehqripsastl
pv
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1lajC (C:)
maqngtgggsrrprrgrrnnnnnnstardkallaltqqvnrlaniasssapslqhptfia
skkcragytytsldvrptrtekdksfgqrliipvpvseypkkkvscvqvrlnpspkfnst
iwvslrrldettlltsenvfklftdglavliyqhvptgiqpnnkitfdmsnvgaeigdmg
kyalivyskddvleademvihidiehqripsastlpv
Sequence, based on observed residues (ATOM records): (download)
>1lajC (C:)
altqqvnrlaniasssapslqhptfiaskkcragytytsldvrptrtekdksfgqrliip
vpvseypkkkvscvqvrlnpspkfnstiwvslrrldettlltsenvfklftdglavliyq
hvptgiqpnnkitfdmsnvgaeigdmgkyalivyskddvleademvihidiehqripsas
tlpv
- Chain 'R':
No sequence available.