PDB entry 1l9z

View 1l9z on RCSB PDB site
Description: Thermus aquaticus RNA Polymerase Holoenzyme/Fork-Junction Promoter DNA Complex at 6.5 A Resolution
Deposited on 2002-03-27, released 2002-05-31
The last revision prior to the SCOP 1.61 freeze date was dated 2002-05-31, with a file datestamp of 2002-05-31.
Experiment type: XRAY
Resolution: 6.5 Å
R-factor: N/A
AEROSPACI score: -0.03 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Domains in SCOP 1.61: d1l9za_
  • Chain 'B':
    Domains in SCOP 1.61: d1l9zb_
  • Chain 'C':
    Domains in SCOP 1.61: d1l9zc_
  • Chain 'D':
    Domains in SCOP 1.61: d1l9zd_
  • Chain 'E':
    Domains in SCOP 1.61: d1l9ze_
  • Chain 'H':
    Domains in SCOP 1.61: d1l9zh_

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1l9zA (A:)
    lkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyiedvlhef
    stipgvkedvveiilnlkelvvrfldpkmasttlilraegpkevragdftpsadveimnp
    dlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafqvedtr
    lgqrtdldkltlriwtdgsvtplealnqavailkehlnyfanpe
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1l9zB (B:)
    lkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyiedvlhef
    stipgvkedvveiilnlkelvvrfldpkmasttlilraegpkevragdftpsadveimnp
    dlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafqvedtr
    lgqrtdldkltlriwtdgsvtplealnqavailkehlnyf
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1l9zC (C:)
    eikrfgrireviplpplteiqvesykkalqadvppekrenvgiqaafketfpieegdkgk
    gglvldfleyrigdppfsqdecrekdltyqaplyarlqlihkdtglikedevflghlplm
    tedgsfiingadrvivsqihrspgvyftpdparpgryiasiiplpkrgpwidleveasgv
    vtmkvnkrkfplvlllrvlgydqetlvrelsaygdlvqglldeavlamrpeeamvrlftl
    lrpgdppkkdkalaylfglladpkrydlgeagrykaeeklgvglsgrtlvrfedgefkde
    vflptlrylfaltagvpghevddidhlgnrrirtvgelmadqfrvglarlargvrermvm
    gspdtltpaklvnsrpleaalreffsrsqlsqfkdetnplsslrhkrrisalgpggltre
    ragfdvrdvhrthygricpvetpeganiglitslaayarvdalgfirtpyrrvkngvvte
    evvymtaseedrytiaqantplegdriatdrvvarrrgepvivapeevefmdvspkqvfs
    lntnlipflehddanralmgsnmqtqavpliraqapvvmtgleervvrdslaalyaeedg
    evvkvdgtriavryedgrlvhplrryarsnqgtafdqrprvrvgqrvkkgdlladgpase
    egflalgqnvlvaimpfdgynfedaiviseellkrdfytsihieryeieardtklgperi
    trdiphlseaalrdldeegivrigaevkpgdilvgrtsfkgeqepspeerllrsifgeka
    rdvkdtslrvppgeggivvgrlrlrrgdpgvelkpgvrevvrvfvaqkrklqvgdklanr
    hgnkgvvakilpvedmphlpdgtpvdvilnplgvpsrmnlgqilethlglagyflgqryi
    spvfdgatepeikellaeafnlyfgkrqgegfgvdkrekevlaraeklglvspgkspeeq
    lkelfdlgkvvlydgrtgepfegpivvgqmfimklyhmvedkmharstgpyslitqqplg
    gkaqfggqrfgemevwaleaygaahtlqemltiksddiegrnaayqaiikgedvpepsvp
    esfrvlvkelqalaldvqtldekdnpvdifegla
    

    Sequence, based on observed residues (ATOM records): (download)
    >1l9zC (C:)
    eikrfgrireviplpplteiqvesykkalqadvppekrenvgiqaafketfpieeglvld
    fleyrigdppfsqdecrekdltyqaplyarlqlihkdtglikedevflghlplmtedgsf
    iingadrvivsqihrspgvyftpdparpgryiasiiplpkrgpwidleveasgvvtmkvn
    krkfplvlllrvlgydqetlvrelsglldeavlamrpeeamvrlftllrpglaylfglla
    dpkrydlgeagrykaeeklgvglsgrtlvfkdevflptlrylfaltagvpghevddidhl
    gnrrirtvgelmadqfrvglarlargvrermvmgspdtltpaklvnsrpleaalreffsr
    sqlsqfkdetnplsslrhkrrisalgpggltreragfdvrdvhrthygricpvetpegan
    iglitslaayarvdalgfirtpyrrvkngvvteevvymtaseedrytiaqantplegdri
    atdrvvarrrgepvivapeevefmdvspkqvfslntnlipflehddanralmgsnmqtqa
    vpliraqapvvmtgleervvrdslaalyaeedgevvkvdgtriavryedgrlvhplrrya
    rsnqgtafdqrprvrvgqrvdlladgpaseegflalgqnvlvaimpfdgynfedaivise
    ellkrdfytsihieryeieardtklgperitrdiphlseaalrdldeegivrigaevkpg
    dilvgrtsfkgeqepspeerllrsifgekardvkdtslrvppgeggivvgrlrlrrgdpg
    velkpgvrevvrvfvaqkrklqvgdklanrhgnkgvvakilpvedmphlpdgtpvdviln
    plgvpsrmnlgqilethlglagyflgqryispvfdgatepeikellaeafnlyfgkrqge
    gfgvdkrekevlaraeklglvspgkspeeqlkelfdlgkvvlydgrtgepfegpivvgqm
    fimklyhmvedkmharstgpyslitqqplggkaqfggqrfgemevwaleaygaahtlqem
    ltiksddiegrnaayqaiikgedvpepsvpesfrvlvkelqalaldvqtldekdnpvdif
    egla
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1l9zD (D:)
    kevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacgk
    ykrqrfegkvcercgvevtrsivrryrmghielatpaahiwfvkdvpskigtlldlsate
    leqvlyfnkyivldpkgavldgvpvekrqlltdeeyrelrygkqetyplpagvdalvkdg
    eevvkgqelapgvvsrmdgvalyrfprrvrvdylrkeraalriplsawvekeayrpgevl
    aelsepylfraeesgvvelkdlaeghliylrqeeevvaryflpagmtplvvegeivevgq
    plaegkgllrlprhmtakeveaeeegdsvhltlflewtepkdykvaphmnvivpegakvq
    agekivaaidpeeeviaeaegvvhlhepasilvvkarvypfeddvevttgdrvapgdvla
    dggkvkseiygrvevdlvrnvvrvvesydidarmgaeaiqellkeldleklerelleemk
    hpsrarrakarkrlevvrafldsgnrpewmileavpvlppdlrpmvqvdggrfatsdlnd
    lyrrlinrnnrlkkllaqgapeiiirnekrmlqeavdavidngrrgspvtnpgserplrs
    ltdilsgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkme
    ekafapnvkaarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgiqafqpvlve
    gqsiqlhplvceafnadfdgdqmavhvplssfaqaeariqmlsahnllspasgeplakps
    rdiilglyyitqvrkekkgagmafatpeealaayergevalnapivvagretsvgrlkfv
    fanpdeallavahglldlqdvvtvrylgrrletspgrilfarivgeavgdekvaqeliqm
    dvpqeknslkdlvyqaflrlgmektarlldalkyygftlsttsgitigiddavipeekqr
    yleeadrklrqieqayemgfltdrerydqviqlwtettekvtqavfknfeenypfnplyv
    maqsgargnpqqirqlcgmrglmqkpsgetfevpvrssfregltvleyfisshgarkgga
    dtalrtadsgyltrklvdvaheivvreadcgttnyisvplfqmdevtrtlrlrkrsdies
    glygrvlarevealgrrleegrylsledvhflikaaeagevrevpvrspltcqtrygvcq
    kcygydlsmarpvsigeavgvvaaesigepgtqltmrtfhtggvavgtditqglprviel
    fearrpkakaviseidgvvrieegedrlsvfvesegfskeyklpkdarllvkdgdyveag
    qpltrgaidphqlleakgpeaverylvdeiqkvyraqgvklhdkhieivvrqmlkyvevt
    dpgdsrllegqvlekwdvealnerliaegkvpvawkpllmgvtksalstkswlsaasfqn
    tthvlteaaiagkkdeliglkenvilgrlipagtgsdfvrftqvvdqrtlkaieear
    

    Sequence, based on observed residues (ATOM records): (download)
    >1l9zD (D:)
    kevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacgk
    ykrqrfegkvcercgvevtrsivrryrmghielatpaahiwfvkdvpskigtlldlsate
    leqvlyfnkyivldpkgavldgvpvekrqlltdeedarmgaeaiqellkeldleklerel
    leemkhpsrarrakarkrlevvrafldsgnrpewmileavpvlppdlrpmvqvdggrfat
    sdlndlyrrlinrnnrlkkllaqgapeiiirnekrmlqeavdavidngrrgspvtnpgse
    rplrsltdilsgkqgrfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelfkpfl
    lkkmeekafapnvkaarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgiqafq
    pvlvegqsiqlhplvceafnadfdgdqmavhvplssfaqaeariqmlsahnllspasgep
    lakpsrdiilglyyitqvrkekkgagmafatpeealaayergevalnapivvagretsvg
    rlkfvfanpdeallavahglldlqdvvtvrylgrrletspgrilfarivgeavgdekvaq
    eliqmdvpqeknslkdlvyqaflrlgmektarlldalkyygftlsttsgitigiddavip
    eekqryleeadrklrqieqayemgfltdrerydqviqlwtettekvtqavfknfeenypf
    nplyvmaqsgargnpqqirqlcgmrglmqkpsgetfevpvrssfregltvleyfisshga
    rkggadtalrtadsgyltrklvdvaheivvreadcgttnyisvplfqmdevtrtlrlrkr
    sdiesglygrvlarevealgrrleegrylsledvhflikaaeagevrevpvrspltcqtr
    ygvcqkcygydlsmarpvsigeavgvvaaesigepgtqltmrtprvielfearrpkakav
    iseidgvvrieegedrlsvfvesegfskeyklpkdarllvkdgdyveagqpltrgaidph
    qlleakgpeaverylvdeiqkvyraqgvklhdkhieivvrqmlkyvevtdpgdsrllegq
    vlekwdvealnerliavpvawkpllmgvtksalstkswlsaasfqntthvlteaaiagkk
    deliglkenvilgrlipagtgsdfvrftqvvdqrtlkaieear
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1l9zE (E:)
    aepgidklfgmvdskyrltvvvakraqqllrhrfkntvlepeerpkmrtleglyddpnav
    twamkelltgrlffgenlvpedrlqkemerly
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >1l9zH (H:)
    sdpvrqylheigqvplltleeeidlarkveegmeaikklseatgldqelirevvrakilg
    tariqkipglkekpdpktveevdgklkslpkelkrylhiaregeaarqhlieanlrlvvs
    iakkytgrglsfldliqegnqgliravekfeykrrfkfstyatwwirqainraiadqart
    iripvhmvetinklsrtarqlqqelgrepsyeeiaeamgpgwdakrveetlkiaqepvsl
    etpigdekdsfygdfipdenlpspveaaaqsllseelekalsklsereamvlklrkglid
    grehtleevgayfgvtrerirqienkalrklkyhesrtrklrdfle
    

    Sequence, based on observed residues (ATOM records): (download)
    >1l9zH (H:)
    sdpvrqylheigqvplltleeeidlarkveegmeaikklseatgldqelirevvrakilg
    taevdgklkslpkelkrylhiaregeaarqhlieanlrlvvsiakkytgrglsfldliqe
    gnqgliravekfeykrrfkfstyatwwirqainraiadqartiripvhmvetinklsrta
    rqlqqelgrepsyeeiaeamgpgwdakrveetlkiaqepvsletpidfipdenlpspvea
    aaqsllseelekalsklsereamvlklrkglidgrehtleevgayfgvtrerirqienka
    lrklkyhesrtrklrdfle