PDB entry 1l8w

View 1l8w on RCSB PDB site
Description: Crystal Structure of Lyme Disease Variable Surface Antigen VlsE of Borrelia burgdorferi
Class: immune system
Keywords: Variable Surface Protein, VMP-like sequence, IMMUNE SYSTEM
Deposited on 2002-03-21, released 2002-06-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-03-07, with a file datestamp of 2018-03-02.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VlsE1
    Species: Borreliella burgdorferi [TaxId:139]
    Gene: vlsE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1l8wa_
  • Chain 'B':
    Compound: VlsE1
    Species: Borreliella burgdorferi [TaxId:139]
    Gene: vlsE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1l8wb_
  • Chain 'C':
    Compound: VlsE1
    Species: Borreliella burgdorferi [TaxId:139]
    Gene: vlsE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1l8wc_
  • Chain 'D':
    Compound: VlsE1
    Species: Borreliella burgdorferi [TaxId:139]
    Gene: vlsE
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1l8wd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1l8wA (A:)
mrgshhhhhhgssqvadkddptnkfyqsviqlgngfldvftsfgglvaeafgfksdpkks
dvktyfttvaaklektktdlnslpkeksdissttgkpdstgsvgtavegaikevselldk
lvkavktaegassgtaaigevvadadaakvadkasvkgiakgikeiveaaggseklkava
aakgennkgagklfgkagaaahgdseaaskaagavsavsgeqilsaivtaadaaeqdgkk
peeaknpiaaaigdkdggaefgqdemkkddqiaaaialrgmakdgkfavkdgekekaega
ikgaaesavrkvlgaitgligdavssglrkvgdsvkaasketppalnk

    Sequence, based on observed residues (ATOM records): (download) 
    >1l8wA (A:)
gglvaeafgfksdpkksdvktyfttvaaklektktdlnslptavegaikevselldklvk
avktaegassgtaaigevvadadaakvadkasvkgiakgikeiveaaggseklkavaaak
gennkgagklfgkagaaahgdseaaskaagavsavsgeqilsaivtaadaaeqdgkkpee
aknpiaaaigdkdggaefgqdemkkddqiaaaialrgmakdgkfavkdgekekaegaikg
aaesavrkvlgaitgligdavssglrkvgds

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1l8wB (B:)
mrgshhhhhhgssqvadkddptnkfyqsviqlgngfldvftsfgglvaeafgfksdpkks
dvktyfttvaaklektktdlnslpkeksdissttgkpdstgsvgtavegaikevselldk
lvkavktaegassgtaaigevvadadaakvadkasvkgiakgikeiveaaggseklkava
aakgennkgagklfgkagaaahgdseaaskaagavsavsgeqilsaivtaadaaeqdgkk
peeaknpiaaaigdkdggaefgqdemkkddqiaaaialrgmakdgkfavkdgekekaega
ikgaaesavrkvlgaitgligdavssglrkvgdsvkaasketppalnk

    Sequence, based on observed residues (ATOM records): (download) 
    >1l8wB (B:)
ptnkfyqsviqlgngfldvftsfgglvaeafgfksdpkksdvktyfttvaaklektktdl
nslptavegaikevselldklvkavktaegassgtaaigevvadadaakvadkasvkgia
kgikeiveaaggseklkavaaakgennkgagklfgkagaaahgdseaaskaagavsavsg
eqilsaivtaadaaeqdgkkpeeaknpiaaaigdkdggaefgqdemkkddqiaaaialrg
makdgkfavkdgekekaegaikgaaesavrkvlgaitgligdavssglrkvgdsvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1l8wC (C:)
mrgshhhhhhgssqvadkddptnkfyqsviqlgngfldvftsfgglvaeafgfksdpkks
dvktyfttvaaklektktdlnslpkeksdissttgkpdstgsvgtavegaikevselldk
lvkavktaegassgtaaigevvadadaakvadkasvkgiakgikeiveaaggseklkava
aakgennkgagklfgkagaaahgdseaaskaagavsavsgeqilsaivtaadaaeqdgkk
peeaknpiaaaigdkdggaefgqdemkkddqiaaaialrgmakdgkfavkdgekekaega
ikgaaesavrkvlgaitgligdavssglrkvgdsvkaasketppalnk

    Sequence, based on observed residues (ATOM records): (download) 
    >1l8wC (C:)
gglvaeafgfksdpkksdvktyfttvaaklektktdlnstavegaikevselldklvkav
ktaegassgtaaigevvadadaakvadkasvkgiakgikeiveaaggseklkavaaakge
nnkgagklfgkagaaahgdseaaskaagavsavsgeqilsaivtaadaaeqdgkkpeeak
npiaaaigdkdggaefgqdemkkddqiaaaialrgmakdgkfavkdgekekaegaikgaa
esavrkvlgaitgligdavssglrkvgdsvkaas

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1l8wD (D:)
mrgshhhhhhgssqvadkddptnkfyqsviqlgngfldvftsfgglvaeafgfksdpkks
dvktyfttvaaklektktdlnslpkeksdissttgkpdstgsvgtavegaikevselldk
lvkavktaegassgtaaigevvadadaakvadkasvkgiakgikeiveaaggseklkava
aakgennkgagklfgkagaaahgdseaaskaagavsavsgeqilsaivtaadaaeqdgkk
peeaknpiaaaigdkdggaefgqdemkkddqiaaaialrgmakdgkfavkdgekekaega
ikgaaesavrkvlgaitgligdavssglrkvgdsvkaasketppalnk

    Sequence, based on observed residues (ATOM records): (download) 
    >1l8wD (D:)
kfyqsviqlgngfldvftsfgglvaeafgfksdpkksdvktyfttvaaklektktdlnst
avegaikevselldklvkavktaegassgtaaigevvadadaakvadkasvkgiakgike
iveaaggseklkavaaakgennkgagklfgkagaaahgdseaaskaagavsavsgeqils
aivtaadaaeqdgkkpeeaknpiaaaigdkdggaefgqdemkkddqiaaaialrgmakdg
kfavkdgekekaegaikgaaesavrkvlgaitgligdavssglrkvgdsvkaasketppa