PDB entry 1kpj

View 1kpj on RCSB PDB site
Description: Crystal structure of the large ribosomal subunit from Deinococcus radiodurans
Deposited on 2001-12-31, released 2002-01-07
The last revision was dated 2002-06-07, with a file datestamp of 2007-04-25.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.24
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '0':
    Compound: 23s rRNA
    Species: Deinococcus radiodurans
  • Chain '1':
    Compound: ribosomal protein L33
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295772
  • Chain '2':
    Compound: ribosomal protein L34
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295875 (0-End)
  • Chain '3':
    Compound: ribosomal protein L35
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295728 (0-End)
  • Chain '4':
    Compound: ribosomal protein L36
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295847
  • Chain '9':
    Compound: 5s rRNA
    Species: Deinococcus radiodurans
  • Chain 'A':
    Compound: ribosomal protein l2
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294037
  • Chain 'B':
    Compound: ribosomal protein l3
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294034 (0-End)
  • Chain 'C':
    Compound: ribosomal protein l4
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294035 (0-End)
  • Chain 'D':
    Compound: ribosomal protein l5
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294046
  • Chain 'E':
    Compound: ribosomal protein l6
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295834
  • Chain 'F':
    Compound: ribosomal protein l9
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_293828 (0-End)
  • Chain 'G':
    Compound: ribosomal protein l11
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295769 (0-End)
  • Chain 'H':
    Compound: ribosomal protein l13
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_293898
  • Chain 'I':
    Compound: ribosomal protein l14
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294044
  • Chain 'J':
    Compound: ribosomal protein l15
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295838
  • Chain 'K':
    Compound: ribosomal protein L16
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294041
  • Chain 'L':
    Compound: ribosomal protein L17
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295852 (Start-115)
  • Chain 'M':
    Compound: ribosomal protein l18
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295835 (Start-112)
  • Chain 'N':
    Compound: ribosomal protein l19
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294479
  • Chain 'O':
    Compound: ribosomal protein L20
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295727
  • Chain 'P':
    Compound: ribosomal protein L21
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_293812 (0-99)
  • Chain 'Q':
    Compound: ribosomal protein l22
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294039 (Start-133)
  • Chain 'R':
    Compound: ribosomal protein l23
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294036 (0-End)
  • Chain 'S':
    Compound: ribosomal protein l24
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294045
  • Chain 'T':
    Compound: general stress protein ctc
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294150 (0-End)
  • Chain 'U':
    Compound: ribosomal protein L27
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_293811
  • Chain 'V':
    Compound: Ribosomal Protein L28
    Species: Deinococcus radiodurans
  • Chain 'W':
    Compound: ribosomal protein l29
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294042
  • Chain 'X':
    Compound: ribosomal protein l30
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_295837 (0-54)
  • Chain 'Y':
    Compound: ribosomal protein L31
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_294549 (0-72)
  • Chain 'Z':
    Compound: ribosomal protein l32
    Species: Deinococcus radiodurans
    Database cross-references and differences (RAF-indexed):
    • GB NP_296087 (0-End)
  • Heterogens: MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '0':
    No sequence available.

  • Chain '1':
    Sequence, based on SEQRES records:
    >1kpj1 (1:)
makdgpriivkmessagtgfyytttknrrntqaklelkkydpvakkhvvfrekkv

    Sequence, based on observed residues (ATOM records):
    >1kpj1 (1:)
akdgpriivkmessagtgfyytttknrrntqaklelkkydpvakkhvvfrekk

  • Chain '2':
    Sequence, based on SEQRES records:
    >1kpj2 (2:)
mkrtyqpnnrkrakthgfrarmktksgrnilarrrakgrhqltvsde

    Sequence, based on observed residues (ATOM records):
    >1kpj2 (2:)
mkrtyqpnnrkrakthgfrarmktksgrnilarrrakgrhqltvsd

  • Chain '3':
    Sequence, based on SEQRES records:
    >1kpj3 (3:)
pkmkthkmakrrikitgtgkvmafksgkrhqntgksgdeirgkgkgfvlakaewarmklm
lprgk

    Sequence, based on observed residues (ATOM records):
    >1kpj3 (3:)
pkmkthkmakrrikitgtgkvmafksgkrhqntgksgdeirgkgkgfvlakaewarmklm
lpr

  • Chain '4':
    Sequence, based on SEQRES records:
    >1kpj4 (4:)
mkvrssvkkmcdnckvvrrhgrvlvicsnvkhkqrqg

    Sequence, based on observed residues (ATOM records):
    >1kpj4 (4:)
kvrssvkkmcdnckvvrrhgrvlvicsnvkhkqrq

  • Chain '9':
    No sequence available.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >1kpjA (A:)
avkkyrpytpsrrqmttadfsgltkkrpekaltealpktggrnnrgritsrfiggghkrl
yriidfkrrdksgvnakvaaieydpnrsariallhyadgekryilapegltvgatvnagp
eaepklgnalplrfvpvgavvhalelvpgkgaqlarsagtsvqvqgkesdyvivrlpsge
lrrvhsecyatigavgnaehknivlgkagrsrwlgrkphqrgsamnpvdhphgggegrtg
agrvpvtpwgkptkglktrrkrktsdrfivtrrk

    Sequence, based on observed residues (ATOM records):
    >1kpjA (A:)
kkyrpytpsrrqmttadfsgltkkrpekaltealpktggrnnrgritsrfiggghkrlyr
iidfkrrdksgvnakvaaieydpnrsariallhyadgekryilapegltvgatvnagpea
epklgnalplrfvpvgavvhalelvpgkgaqlarsagtsvqvqgkesdyvivrlpsgelr
rvhsecyatigavgnaehknivlgkagrsrwlgrkphqrgsamnpvdhphgggegrtgag
rvpvtpwgkptkglktrrkrktsdrfivtr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >1kpjB (B:)
mkgilgtkigmtqiwkndraipvtvvlagpcpivqrktaqtdgyeavqigyapkaerkvn
kpmqghfakagvaptrilrefrgfapdgdsvnvdifaegekidatgtskgkgtqgvmkrw
nfaggpashgskkwhrrpgsigqrktpgrvykgkrmaghmgmervtvqnlevveiragen
lilvkgaipgangglvvlrsaakasaakggk

    Sequence, based on observed residues (ATOM records):
    >1kpjB (B:)
mkgilgtkigmtqiwkndraipvtvvlagpcpivqrktaqtdgyeavqigyapkaerkvn
kpmqghfakagvaptrilrefrgfapdgdsvnvdifaegekidatgtskgkgtqgvmkrw
nfaggpashgskkwhrrpgsigqrktpgrvykgkrmaghmgmervtvqnlevveiragen
lilvkgaipgangglvvlrsaakas

  • Chain 'C':
    Sequence, based on SEQRES records:
    >1kpjC (C:)
aqinvigqnggrtielplpevnsgvlhevvtwqlasrrrgtastrtraqvsktgrkmygq
kgtgnarhgdrsvptfvgggvafgpkprsydytlprqvrqlglamaiasrqeggklvavd
gfdiadaktknfiswakqngldgtekvllvtddentrraarnvswvsvlpvagvnvydil
rhdrlvidaaaleiveeeageeqq

    Sequence, based on observed residues (ATOM records):
    >1kpjC (C:)
aqinvigqnggrtielplpevnsgvlhevvtwqlasrrrgtastrtraqvsktgrkmygq
kgtgnarhgdrsvptfvgggvafgpkprsydytlprqvrqlglamaiasrqeggklvavd
gfdiadaktknfiswakqngldgtekvllvtddentrraarnvswvsvlpvagvnvydil
rhdrlvidaaaleivee

  • Chain 'D':
    Sequence, based on SEQRES records:
    >1kpjD (D:)
mqqlktkyndqvrpalmqqfgyssvmavpriekivvneglgsskedskaidkaakelali
tlqkpiitkakksisnfklrqgmpvgikvtlrgermyvflekliniglprirdfrginpn
afdgrgnynlgikeqlifpeitydmvdktrgmditivttaktdeearallqsmglpfrkq

    Sequence, based on observed residues (ATOM records):
    >1kpjD (D:)
qqlktkyndqvrpalmqqfgyssvmavpriekivvneglgsskedskaidkaakelalit
lqkpiitkakksisnfklrqgmpvgikvtlrgermyvflekliniglprirdfrginpna
fdgrgnynlgikeqlifpeitydmvdktrgmditivttaktdeearallqsmglpfrk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >1kpjE (E:)
msrigkqpiavpsgvtvnaqdgvfkvkgpkgeltvpynteltvrqdgdqllverpsdaqk
hralhgltrtlvanavkgvsdgytinlelrgvgfrakltgkalemnigyshpviieppag
vtfavpeptridvsgidkqlvgqvaanvrkvrkpdayhgkgvrfvgeqialkagkagatg
gkgkk

    Sequence, based on observed residues (ATOM records):
    >1kpjE (E:)
gkqpiavpsgvtvnaqdgvfkvkgpkgeltvpynteltvrqdgdqllverpsdaqkhral
hgltrtlvanavkgvsdgytinlelrgvgfrakltgkalemnigyshpviieppagvtfa
vpeptridvsgidkqlvgqvaanvrkvrkpdayhgkgvrfvgeqialkagkagatgg

  • Chain 'F':
    Sequence, based on SEQRES records:
    >1kpjF (F:)
mqvillepsrlgktgevvsvkdgyarnwlipqglavsatrtnmktleaqlrsiekrqaqe
kavaedlasrlngvavelsvragegkiygavthqdvansldqlgfdvdrrkidmpktvke
vgeydiayrahpevtipmklvvhaak

    Sequence, based on observed residues (ATOM records):
    >1kpjF (F:)
mqvillepsrlgktgevvsvkdgyarnwlipqglavsatrtnmktleaqlrs

  • Chain 'G':
    Sequence, based on SEQRES records:
    >1kpjG (G:)
mkkvagivklqlpagkatpappvgpalgqyganimeftkafnaqtadkgdaiipveitiy
adrsftfitktppmsylirkaagigkgsstpnkakvgklnwdqvleiaktkmpdlnagsv
eaaantvagtarsmgvtveggpna

    Sequence, based on observed residues (ATOM records):
    >1kpjG (G:)
mkkvagivklqlpagkatpappvgpalgqyganimeftkafnaqtadkgdaiipveitiy
adrsftfitktppmsylirkaagigkgsstpnkakvgklnwdqvleiaktkmpdlnagsv
eaaantvagtarsmgvtveggpn

  • Chain 'H':
    Sequence, based on SEQRES records:
    >1kpjH (H:)
mafpdtdvspprggpsspakspllrsfkvktyipkndeqnwvvvdasgvplgrlatlias
rirgkhrpdftpnmiqgdfvvvinaaqvaltgkklddkvytrytgyqgglktetareals
khperviehavfgmlpkgrqgramhtrlkvyagethphsaqkpqvlktqplevk

    Sequence, based on observed residues (ATOM records):
    >1kpjH (H:)
vktyipkndeqnwvvvdasgvplgrlatliasrirgkhrpdftpnmiqgdfvvvinaaqv
altgkklddkvytrytgyqgglktetarealskhperviehavfgmlpkgrqgramhtrl
kvyagethphsaqkpqvlktqpl

  • Chain 'I':
    Sequence, based on SEQRES records:
    >1kpjI (I:)
mimpqsrldvadnsgareimcirvlnsgiggkglttggggnkryahvgdiivasvkdaap
rgavkagdvvkavvvrtshaikradgstirfdrnaaviinnqgeprgtrvfgpvarelrd
rrfmkivslapevl

    Sequence, based on observed residues (ATOM records):
    >1kpjI (I:)
impqsrldvadnsgareimcirvlnsgiggkglttggggnkryahvgdiivasvkdaapr
gavkagdvvkavvvrtshaikradgstirfdrnaaviinnqgeprgtrvfgpvarelrdr
rfmkivslapev

  • Chain 'J':
    Sequence, based on SEQRES records:
    >1kpjJ (J:)
mklhdlkptpgsrkdrkrvgrgpggtdktagrghkgqksrsgagkgaffeggrsrliarl
pkrgfnnvgttyevvklsqlqdledttfdrdtleayrlvrrknrpvkllasgeisravtv
hvdaasaaaikaveaaggrvvlpevqtqqddaqkae

    Sequence, based on observed residues (ATOM records):
    >1kpjJ (J:)
hdlkptpgsrkdrkrvgrgpggtdktagrghkgqksrsgagkgaffeggrsrliarlpkr
gfnnvgttyevvklsqlqdledttfdrdtleayrlvrrknrpvkllasgeisravtvhvd
aasaaaikaveaaggrvvlpe

  • Chain 'K':
    Sequence, based on SEQRES records:
    >1kpjK (K:)
mllpkrtkfrkqfrgrmtgdakggdyvafgdygliamepawiksnqieacrivmsrhfrr
ggkiyirifpdkpvtkkpaetrmgkgkgaveywvsvvkpgrvmfevagvteeqakeafrl
aghklpiqtkmvkrevydeaq

    Sequence, based on observed residues (ATOM records):
    >1kpjK (K:)
tkfrkqfrgrmtgdakggdyvafgdygliamepawiksnqieacrivmsrhfrrggkiyi
rifpdkpvtkkpaetrmgkgkgaveywvsvvkpgrvmfevagvteeqakeafrlaghklp
iqtk

  • Chain 'L':
    Sequence, based on SEQRES records:
    >1kpjL (L:)
mrhgkagrklnrnssarvalaraqatallregriqttltkakelrpfveqlittakggdl
hsrrlvaqdihdkdvvrkvmdevapkyaerpggytrilrvgtrrgdgvtmalielv

    Sequence, based on observed residues (ATOM records):
    >1kpjL (L:)
hgkagrklnrnssarvalaraqatallregriqttltkakelrpfveqlittakggdlhs
rrlvaqdihdkdvvrkvmdevapkyaerpggytrilrvgtrrgdgvtmalielv

  • Chain 'M':
    Sequence, based on SEQRES records:
    >1kpjM (M:)
atattirrklrtrrkvrtttaasgrlrlsvyrsskhiyaqiiddsrgqtlaaassaalks
gnktdtaaavgkalaaaaaekgikqvvfdrgsykyhgrvkaladaareggldf

    Sequence, based on observed residues (ATOM records):
    >1kpjM (M:)
attirrklrtrrkvrtttaasgrlrlsvyrsskhiyaqiiddsrgqtlaaassaalksgn
ktdtaaavgkalaaaaaekgikqvvfdrgsykyhgrvkaladaareggldf

  • Chain 'N':
    Sequence, based on SEQRES records:
    >1kpjN (N:)
mqthikinrgellrgieqdhtrqlpdfrpgdtvrvdtkvregnrtrsqafegvviaings
gsrksftvrkisfgegvervfpfasplvnqvtivergkvrraklyylrelrgkaariksd
rsrvmkdaaraqqdkanasasqaaaaqadvtvisaapevapetqge

    Sequence, based on observed residues (ATOM records):
    >1kpjN (N:)
qthikinrgellrgieqdhtrqlpdfrpgdtvrvdtkvregnrtrsqafegvviaingsg
srksftvrkisfgegvervfpfasplvnqvtivergkvrraklyylrelrgkaariksdr
srvmk

  • Chain 'O':
    Sequence, based on SEQRES records:
    >1kpjO (O:)
mpraktgivrrrrhkkvlkrakgfwgsrskqyrnafqtllnaatyeyrdrrnkkrdfrrl
wiqrinagarlhgmnystfinglkranidlnrkvladiaarepeafkalvdasrnarq

    Sequence, based on observed residues (ATOM records):
    >1kpjO (O:)
praktgivrrrrhkkvlkrakgfwgsrskqyrnafqtllnaatyeyrdrrnkkrdfrrlw
iqrinagarlhgmnystfinglkranidlnrkvladiaarepeafkalvdasrna

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >1kpjP (P:)
mfaiiqtggkqyrvsegdvirveslqgeagdkvelkalfvggeqtvfgedagkytvqaev
vehgrgkkiyirkyksgvqyrrrtghrqnftaikilgiqg

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >1kpjQ (Q:)
mtapeqtfrnkkqrkqqvklrkpgfavakyvrmsprkvrlvvdvirgksvqdaedllrfi
prsasepvakvlnsakanalhndemledrlfvkeayvdagptlkrliprargsaniikkr
tshitiivaekgnk

    Sequence, based on observed residues (ATOM records):
    >1kpjQ (Q:)
eqtfrnkkqrkqqvklrkpgfavakyvrmsprkvrlvvdvirgksvqdaedllrfiprsa
sepvakvlnsakanalhndemledrlfvkeayvdagptlkrliprargsaniikkrtshi
tiivaekgnk

  • Chain 'R':
    Sequence, based on SEQRES records:
    >1kpjR (R:)
shydilqapvisekaysamergvysfwvspkatkteikdaiqqafgvrvigistmnvpgk
rkrvgrfigqrndrkkaivrlaegqsiealagqa

    Sequence, based on observed residues (ATOM records):
    >1kpjR (R:)
shydilqapvisekaysamergvysfwvspkatkteikdaiqqafgvrvigistmnvpgk
rkrvgrfigqrndrkkaivrlaegqsiealagq

  • Chain 'S':
    Sequence, based on SEQRES records:
    >1kpjS (S:)
mprpsagshhndklhfkkgdtvivlsgkhkgqtgkvllalprdqkvvvegvnvitknvkp
smtnpqggqeqrelalhaskvalvdpetgkatrvrkqivdgkkvrvavasgktid

    Sequence, based on observed residues (ATOM records):
    >1kpjS (S:)
prpsagshhndklhfkkgdtvivlsgkhkgqtgkvllalprdqkvvvegvnvitknvkps
mtnpqggqeqrelalhaskvalvdpetgkatrvrkqivdgkkvrvavasgkt

  • Chain 'T':
    Sequence, based on SEQRES records:
    >1kpjT (T:)
meltakprtpkqkldesmiaavaynkennvsfaldrkafdrafrqqsttglfditvegge
tfpalvkavqmdkrkrapihvdfymvtygepvevsvpvhttgrsqgevqgglvdivvhnl
qivapgprripqelvvdvtkmnigdhitagdiklpegctlaadpeltvvsvlpprltaee
leaevqaaqvaglvaagelseeaaeavlegdasleevkaeasednagtdsednsdaq

    Sequence, based on observed residues (ATOM records):
    >1kpjT (T:)
meltakprtpkqkldesmiaavaynkennvsfaldrkafdrafrqqsttglfditvegge
tfpalvkavqmdkrkrapihvdfymvtygepvevsvpvhttgrsqgevqgglvdivvhnl
qivapgprripqelvvdvtkmnigdhitagdiklpegctlaadpeltvvsvlpprltaee
leaevqaaqvaglvaagelseeaaeavlegdasleevkaease

  • Chain 'U':
    Sequence, based on SEQRES records:
    >1kpjU (U:)
mahkkgvgsskngrdsnpkylgvkkfggevvkagnilvrqrgtkfkagqgvgmgrdhtlf
alsdgkvvfinkgkgarfisieaaqtevaad

    Sequence, based on observed residues (ATOM records):
    >1kpjU (U:)
ahkkgvgsskngrdsnpkylgvkkfggevvkagnilvrqrgtkfkagqgvgmgrdhtlfa
lsdgkvvfinkgkgarfisieaaqte

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records:
    >1kpjV (V:)
xxxxxxxxxxxxxxxx

  • Chain 'W':
    Sequence, based on SEQRES records:
    >1kpjW (W:)
mkpsemrnlqatdfakeidarkkelmelrfqaaagqlaqphrvrqlrrevaqlntvkael
arkgeqq

    Sequence, based on observed residues (ATOM records):
    >1kpjW (W:)
kpsemrnlqatdfakeidarkkelmelrfqaaagqlaqphrvrqlrrevaqlntvkaela
rkgeq

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >1kpjX (X:)
mkiklvrsvigrpgnqvktvqalglrkigdsrevsdtpavrgmvktvkhllevqe

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records:
    >1kpjY (Y:)
mqkdlhpkavpckiiyqgqvvmetmstrpeihvdvwsgvhpfwtgeerfldtegrvdkfn
krfgdsyrrgskk

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >1kpjZ (Z:)
akhpvpkkktskskrdmrrshhaltapnltecpqchgkklshhicpncgyydgrqvlav

    Sequence, based on observed residues (ATOM records):
    >1kpjZ (Z:)
akhpvpkkktskskrdmrrshhaltapnltecpqchgkklshhicpncgyydgrqvla