PDB entry 1kog

View 1kog on RCSB PDB site
Description: Crystal structure of E. coli threonyl-tRNA synthetase interacting with the essential domain of its mRNA operator
Class: ligase/RNA
Keywords: Protein-RNA complex, RNA stem-loop, RNA double helix, RNA base triples
Deposited on 2001-12-20, released 2002-04-26
The last revision prior to the SCOP 1.73 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.251
AEROSPACI score: -1.87 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: threonyl-tRNA synthetase
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1koga1, d1koga2
  • Chain 'B':
    Compound: threonyl-tRNA synthetase
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1kogb1, d1kogb2
  • Chain 'C':
    Compound: threonyl-tRNA synthetase
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1kogc1, d1kogc2
  • Chain 'D':
    Compound: threonyl-tRNA synthetase
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1kogd1, d1kogd2
  • Chain 'E':
    Compound: threonyl-tRNA synthetase
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1koge1, d1koge2
  • Chain 'F':
    Compound: threonyl-tRNA synthetase
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1kogf1, d1kogf2
  • Chain 'G':
    Compound: threonyl-tRNA synthetase
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1kogg1, d1kogg2
  • Chain 'H':
    Compound: threonyl-tRNA synthetase
    Species: Escherichia coli
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1kogh1, d1kogh2
  • Chain 'I':
    Compound: Threonyl-tRNA synthetase mRNA
    Species: synthetic, synthetic
  • Chain 'J':
    Compound: Threonyl-tRNA synthetase mRNA
    Species: synthetic, synthetic
  • Chain 'K':
    Compound: Threonyl-tRNA synthetase mRNA
    Species: synthetic, synthetic
  • Chain 'L':
    Compound: Threonyl-tRNA synthetase mRNA
    Species: synthetic, synthetic
  • Chain 'M':
    Compound: Threonyl-tRNA synthetase mRNA
    Species: synthetic, synthetic
  • Chain 'N':
    Compound: Threonyl-tRNA synthetase mRNA
    Species: synthetic, synthetic
  • Chain 'O':
    Compound: Threonyl-tRNA synthetase mRNA
    Species: synthetic, synthetic
  • Chain 'P':
    Compound: Threonyl-tRNA synthetase mRNA
    Species: synthetic, synthetic
  • Heterogens: ZN, TSB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kogA (A:)
rdhrkigkqldlyhmqeeapgmvfwhndgwtifrelevfvrsklkeyqyqevkgpfmmdr
vlwektghwdnykdamfttssenreycikpmncpghvqifnqglksyrdlplrmaefgsc
hrnepsgslhglmrvrgftqddahifcteeqirdevngcirlvydmystfgfekivvkls
trpekrigsdemwdraeadlavaleennipfeyqlgegafygpkieftlydcldrawqcg
tvqldfslpsrlsasyvgednerkvpvmihrailgsmerfigilteefagffptwlapvq
vvimnitdsqseyvneltqklsnagirvkadlrnekigfkirehtlrrvpymlvcgdkev
esgkvavrtrrgkdlgsmdvnevieklqqeirsrslkqlee

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kogB (B:)
rdhrkigkqldlyhmqeeapgmvfwhndgwtifrelevfvrsklkeyqyqevkgpfmmdr
vlwektghwdnykdamfttssenreycikpmncpghvqifnqglksyrdlplrmaefgsc
hrnepsgslhglmrvrgftqddahifcteeqirdevngcirlvydmystfgfekivvkls
trpekrigsdemwdraeadlavaleennipfeyqlgegafygpkieftlydcldrawqcg
tvqldfslpsrlsasyvgednerkvpvmihrailgsmerfigilteefagffptwlapvq
vvimnitdsqseyvneltqklsnagirvkadlrnekigfkirehtlrrvpymlvcgdkev
esgkvavrtrrgkdlgsmdvnevieklqqeirsrslkqlee

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kogC (C:)
rdhrkigkqldlyhmqeeapgmvfwhndgwtifrelevfvrsklkeyqyqevkgpfmmdr
vlwektghwdnykdamfttssenreycikpmncpghvqifnqglksyrdlplrmaefgsc
hrnepsgslhglmrvrgftqddahifcteeqirdevngcirlvydmystfgfekivvkls
trpekrigsdemwdraeadlavaleennipfeyqlgegafygpkieftlydcldrawqcg
tvqldfslpsrlsasyvgednerkvpvmihrailgsmerfigilteefagffptwlapvq
vvimnitdsqseyvneltqklsnagirvkadlrnekigfkirehtlrrvpymlvcgdkev
esgkvavrtrrgkdlgsmdvnevieklqqeirsrslkqlee

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kogD (D:)
rdhrkigkqldlyhmqeeapgmvfwhndgwtifrelevfvrsklkeyqyqevkgpfmmdr
vlwektghwdnykdamfttssenreycikpmncpghvqifnqglksyrdlplrmaefgsc
hrnepsgslhglmrvrgftqddahifcteeqirdevngcirlvydmystfgfekivvkls
trpekrigsdemwdraeadlavaleennipfeyqlgegafygpkieftlydcldrawqcg
tvqldfslpsrlsasyvgednerkvpvmihrailgsmerfigilteefagffptwlapvq
vvimnitdsqseyvneltqklsnagirvkadlrnekigfkirehtlrrvpymlvcgdkev
esgkvavrtrrgkdlgsmdvnevieklqqeirsrslkqlee

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kogE (E:)
rdhrkigkqldlyhmqeeapgmvfwhndgwtifrelevfvrsklkeyqyqevkgpfmmdr
vlwektghwdnykdamfttssenreycikpmncpghvqifnqglksyrdlplrmaefgsc
hrnepsgslhglmrvrgftqddahifcteeqirdevngcirlvydmystfgfekivvkls
trpekrigsdemwdraeadlavaleennipfeyqlgegafygpkieftlydcldrawqcg
tvqldfslpsrlsasyvgednerkvpvmihrailgsmerfigilteefagffptwlapvq
vvimnitdsqseyvneltqklsnagirvkadlrnekigfkirehtlrrvpymlvcgdkev
esgkvavrtrrgkdlgsmdvnevieklqqeirsrslkqlee

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kogF (F:)
rdhrkigkqldlyhmqeeapgmvfwhndgwtifrelevfvrsklkeyqyqevkgpfmmdr
vlwektghwdnykdamfttssenreycikpmncpghvqifnqglksyrdlplrmaefgsc
hrnepsgslhglmrvrgftqddahifcteeqirdevngcirlvydmystfgfekivvkls
trpekrigsdemwdraeadlavaleennipfeyqlgegafygpkieftlydcldrawqcg
tvqldfslpsrlsasyvgednerkvpvmihrailgsmerfigilteefagffptwlapvq
vvimnitdsqseyvneltqklsnagirvkadlrnekigfkirehtlrrvpymlvcgdkev
esgkvavrtrrgkdlgsmdvnevieklqqeirsrslkqlee

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kogG (G:)
rdhrkigkqldlyhmqeeapgmvfwhndgwtifrelevfvrsklkeyqyqevkgpfmmdr
vlwektghwdnykdamfttssenreycikpmncpghvqifnqglksyrdlplrmaefgsc
hrnepsgslhglmrvrgftqddahifcteeqirdevngcirlvydmystfgfekivvkls
trpekrigsdemwdraeadlavaleennipfeyqlgegafygpkieftlydcldrawqcg
tvqldfslpsrlsasyvgednerkvpvmihrailgsmerfigilteefagffptwlapvq
vvimnitdsqseyvneltqklsnagirvkadlrnekigfkirehtlrrvpymlvcgdkev
esgkvavrtrrgkdlgsmdvnevieklqqeirsrslkqlee

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1kogH (H:)
rdhrkigkqldlyhmqeeapgmvfwhndgwtifrelevfvrsklkeyqyqevkgpfmmdr
vlwektghwdnykdamfttssenreycikpmncpghvqifnqglksyrdlplrmaefgsc
hrnepsgslhglmrvrgftqddahifcteeqirdevngcirlvydmystfgfekivvkls
trpekrigsdemwdraeadlavaleennipfeyqlgegafygpkieftlydcldrawqcg
tvqldfslpsrlsasyvgednerkvpvmihrailgsmerfigilteefagffptwlapvq
vvimnitdsqseyvneltqklsnagirvkadlrnekigfkirehtlrrvpymlvcgdkev
esgkvavrtrrgkdlgsmdvnevieklqqeirsrslkqlee

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.