PDB entry 1kjm
View 1kjm on RCSB PDB site
Description: TAP-A-associated rat MHC class I molecule
Class: immune system
Keywords: peptide-MHC complex, heterodimer, extracellular domain, IMMUNE SYSTEM
Deposited on
2001-12-04, released
2002-12-18
The last revision prior to the SCOPe 2.02 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.249
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: RT1 class I histocompatibility antigen, AA alpha chain, heavy chain
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
- Uniprot P16391 (0-275)
- expression tag (276)
- expression tag (261-262)
Domains in SCOPe 2.02: d1kjma1, d1kjma2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1kjmb_ - Chain 'P':
Compound: B6 Peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1kjmA (A:)
gshslryfytavsrpglgeprfiavgyvddtefvrfdsdaenprmeprarwmeregpeyw
eqqtriakeweqiyrvdlrtlrgyynqseggshtiqemygcdvgsdgsllrgyrqdaydg
rdyialnedlktwtaadfaaqitrnkweraryaerlraylegtcvewlsrylelgketll
rsdppeahvtlhprpegdvtlrcwalgfypaditltwqlngedltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrveheglpkplsqrwepllehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1kjmA (A:)
gshslryfytavsrpglgeprfiavgyvddtefvrfdsdaenprmeprarwmeregpeyw
eqqtriakeweqiyrvdlrtlrgyynqseggshtiqemygcdvgsdgsllrgyrqdaydg
rdyialnedlktwtaadfaaqitrnkweraryaerlraylegtcvewlsrylelgketll
rsdppeahvtlhprpegdvtlrcwalgfypaditltwqlngedltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrveheglpkplsqrwepl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1kjmB (B:)
miqktpqiqvysrhppengkpnflncyvsqfhppqieiellkngkkipniemsdlsfskd
wsfyilahteftptetdvyacrvkhvtlkepktvtwdrdm
Sequence, based on observed residues (ATOM records): (download)
>1kjmB (B:)
iqktpqiqvysrhppengkpnflncyvsqfhppqieiellkngkkipniemsdlsfskdw
sfyilahteftptetdvyacrvkhvtlkepktvtwdrdm
- Chain 'P':
No sequence available.