PDB entry 1kg0
View 1kg0 on RCSB PDB site
Description: Structure of the Epstein-Barr Virus gp42 Protein Bound to the MHC class II Receptor HLA-DR1
Class: Viral protein/Immune system
Keywords: virus, c-type lectin domain, membrane fusion, MHC, Viral protein/Immune system COMPLEX
Deposited on
2001-11-25, released
2002-03-27
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.221
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: MHC class II Receptor HLA-DR1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1kg0a1, d1kg0a2 - Chain 'B':
Compound: MHC class II Receptor HLA-DR1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1kg0b1, d1kg0b2 - Chain 'C':
Compound: gp42 Protein
Species: Human herpesvirus 4 [TaxId:10376]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1kg0c_ - Chain 'D':
Compound: Hemagglutinin HA Peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1kg0A (A:)
eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefda
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1kg0B (B:)
trprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaeywn
sqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvsgf
ypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsvts
pltvewra
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1kg0C (C:)
htfqvpqnytkanctycntreytfsykgccfyftkkkhtwngcfqacaekypctyfygpt
pdilpvvtrnlnaieslwvgvyrvgegnwtsldggtfkvyqifgshctyvskfstvpvsh
hecsflkpclcvsqrs
- Chain 'D':
No sequence available.