PDB entry 1ker

View 1ker on RCSB PDB site
Description: The crystal structure of dTDP-D-glucose 4,6-dehydratase (RmlB) from Streptococcus suis with dTDP-D-glucose bound
Class: lyase
Keywords: Rossmann fold
Deposited on 2001-11-17, released 2002-01-25
The last revision prior to the SCOP 1.73 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.175
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dtdp-d-glucose 4,6-dehydratase
    Species: Streptococcus suis
    Gene: RMLB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1kera_
  • Chain 'B':
    Compound: dtdp-d-glucose 4,6-dehydratase
    Species: Streptococcus suis
    Gene: RMLB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1kerb_
  • Heterogens: SO4, DAU, NAD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1kerA (A:)
msqfkniivtggagfigsnfvhyvynnhpdvhvtvldkltyagnkanleailgdrvelvv
gdiadaelvdklaakadaivhyaaeshndnslndpspfihtnfigtytlleaarkydirf
hhvstdevygdlplredlpghgegpgekftaetnynpsspysstkaasdlivkawvrsfg
vkatisncsnnygpyqhiekfiprqitnilagikpklygegknvrdwihtndhstgvwai
ltkgrmgetyligadgeknnkevlelilekmgqpkdaydhvtdraghdlryaidasklrd
elgwtpqftdfsegleetiqwytdnqdwwkaekeaveanyaktqevik

    Sequence, based on observed residues (ATOM records): (download) 
    >1kerA (A:)
qfkniivtggagfigsnfvhyvynnhpdvhvtvldkltyagnkanleailgdrvelvvgd
iadaelvdklaakadaivhyaaeshndnslndpspfihtnfigtytlleaarkydirfhh
vstdevygdlplredlpghgegpgekftaetnynpsspysstkaasdlivkawvrsfgvk
atisncsnnygpyqhiekfiprqitnilagikpklygegknvrdwihtndhstgvwailt
kgrmgetyligadgeknnkevlelilekmgqpkdaydhvtdraghdlryaidasklrdel
gwtpqftdfsegleetiqwytdnqdwwkaekeaveanyaktqevik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1kerB (B:)
msqfkniivtggagfigsnfvhyvynnhpdvhvtvldkltyagnkanleailgdrvelvv
gdiadaelvdklaakadaivhyaaeshndnslndpspfihtnfigtytlleaarkydirf
hhvstdevygdlplredlpghgegpgekftaetnynpsspysstkaasdlivkawvrsfg
vkatisncsnnygpyqhiekfiprqitnilagikpklygegknvrdwihtndhstgvwai
ltkgrmgetyligadgeknnkevlelilekmgqpkdaydhvtdraghdlryaidasklrd
elgwtpqftdfsegleetiqwytdnqdwwkaekeaveanyaktqevik

    Sequence, based on observed residues (ATOM records): (download) 
    >1kerB (B:)
sqfkniivtggagfigsnfvhyvynnhpdvhvtvldkltyagnkanleailgdrvelvvg
diadaelvdklaakadaivhyaaeshndnslndpspfihtnfigtytlleaarkydirfh
hvstdevygdlplredlpghgegpgekftaetnynpsspysstkaasdlivkawvrsfgv
katisncsnnygpyqhiekfiprqitnilagikpklygegknvrdwihtndhstgvwail
tkgrmgetyligadgeknnkevlelilekmgqpkdaydhvtdraghdlryaidasklrde
lgwtpqftdfsegleetiqwytdnqdwwkaekeaveanyaktqevik