PDB entry 1kdn
View 1kdn on RCSB PDB site
Description: structure of nucleoside diphosphate kinase
Class: phosphotransferase
Keywords: transferase, kinase, ATP-binding, phosphotransferase
Deposited on
1996-09-10, released
1997-04-21
The last revision prior to the SCOPe 2.08 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.177
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Dictyostelium discoideum [TaxId:44689]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1kdna_ - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Dictyostelium discoideum [TaxId:44689]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1kdnb_ - Chain 'C':
Compound: Nucleoside diphosphate kinase
Species: Dictyostelium discoideum [TaxId:44689]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1kdnc_ - Heterogens: MG, AF3, ADP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1kdnA (A:)
mstnkvnkertflavkpdgvarglvgeiiaryekkgfvlvglkqlvptkdlaeshyaehk
erpffgglvsfitsgpvvamvfegkgvvasarlmigvtnplasapgsirgdfgvdvgrni
ihgsdsvesanreialwfkpeelltevkpnpnlye
Sequence, based on observed residues (ATOM records): (download)
>1kdnA (A:)
vnkertflavkpdgvarglvgeiiaryekkgfvlvglkqlvptkdlaeshyaehkerpff
gglvsfitsgpvvamvfegkgvvasarlmigvtnplasapgsirgdfgvdvgrniihgsd
svesanreialwfkpeelltevkpnpnlye
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1kdnB (B:)
mstnkvnkertflavkpdgvarglvgeiiaryekkgfvlvglkqlvptkdlaeshyaehk
erpffgglvsfitsgpvvamvfegkgvvasarlmigvtnplasapgsirgdfgvdvgrni
ihgsdsvesanreialwfkpeelltevkpnpnlye
Sequence, based on observed residues (ATOM records): (download)
>1kdnB (B:)
vnkertflavkpdgvarglvgeiiaryekkgfvlvglkqlvptkdlaeshyaehkerpff
gglvsfitsgpvvamvfegkgvvasarlmigvtnplasapgsirgdfgvdvgrniihgsd
svesanreialwfkpeelltevkpnpnlye
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1kdnC (C:)
mstnkvnkertflavkpdgvarglvgeiiaryekkgfvlvglkqlvptkdlaeshyaehk
erpffgglvsfitsgpvvamvfegkgvvasarlmigvtnplasapgsirgdfgvdvgrni
ihgsdsvesanreialwfkpeelltevkpnpnlye
Sequence, based on observed residues (ATOM records): (download)
>1kdnC (C:)
vnkertflavkpdgvarglvgeiiaryekkgfvlvglkqlvptkdlaeshyaehkerpff
gglvsfitsgpvvamvfegkgvvasarlmigvtnplasapgsirgdfgvdvgrniihgsd
svesanreialwfkpeelltevkpnpnlye