PDB entry 1kb6

View 1kb6 on RCSB PDB site
Description: Crystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin (OC) Response Element
Class: transcription/DNA
Keywords: vdr, nuclear receptor, protein-DNA complex, vitamin d, transcription/DNA complex
Deposited on 2001-11-05, released 2002-05-03
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.223
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Vitamin D3 receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: VDR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1kb6a_
  • Chain 'B':
    Compound: Vitamin D3 receptor
    Species: Homo sapiens [TaxId:9606]
    Gene: VDR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1kb6b_
  • Chain 'C':
    Compound: 5'-d(*cp*ap*cp*gp*gp*gp*tp*gp*ap*ap*tp*gp*ap*gp*gp*ap*cp*a)-3'
  • Chain 'D':
    Compound: 5'-d(*tp*gp*tp*cp*cp*tp*cp*ap*tp*tp*cp*ap*cp*cp*cp*gp*tp*g)-3'
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1kb6A (A:)
fdrnvpricgvcgdratgfhfnamtcegckgffrrsmkrkalftcpfngdcritkdnrrh
cqacrlkrcvdigmmkefiltdeevqrkremilkrkeeealkdslrpkls

    Sequence, based on observed residues (ATOM records): (download) 
    >1kb6A (A:)
pricgvcgdratgfhfnamtcegckgffrrsmkrkalftcpfngdcritkdnrrhcqacr
lkrcvdigmmkefiltdeevqrkremilkrkeee

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1kb6B (B:)
fdrnvpricgvcgdratgfhfnamtcegckgffrrsmkrkalftcpfngdcritkdnrrh
cqacrlkrcvdigmmkefiltdeevqrkremilkrkeeealkdslrpkls

    Sequence, based on observed residues (ATOM records): (download) 
    >1kb6B (B:)
pricgvcgdratgfhfnamtcegckgffrrsmkrkalftcpfngdcritkdnrrhcqacr
lkrcvdigmmkefiltdeevqrkremilkrkeeealkdslr

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.