PDB entry 1k78

View 1k78 on RCSB PDB site
Description: Pax5(1-149)+Ets-1(331-440)+DNA
Class: transcription/DNA
Keywords: Paired domain, ETS domain, transcription factor, TRANSCRIPTION/DNA COMPLEX
Deposited on 2001-10-18, released 2002-01-04
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: 0.227
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Paired Box Protein Pax5
    Species: Homo sapiens [TaxId:9606]
    Gene: PAX5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1k78a1, d1k78a2
  • Chain 'B':
    Compound: c-ets-1 protein
    Species: Mus musculus [TaxId:10090]
    Gene: ETS-1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1k78b_
  • Chain 'C':
    Compound: Pax5/Ets Binding Site on the mb-1 promoter
  • Chain 'D':
    Compound: Pax5/Ets Binding Site on the mb-1 promoter
  • Chain 'E':
    Compound: Paired Box Protein Pax5
    Species: Homo sapiens [TaxId:9606]
    Gene: PAX5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1k78e1, d1k78e2
  • Chain 'F':
    Compound: c-ets-1 protein
    Species: Mus musculus [TaxId:10090]
    Gene: ETS-1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1k78f_
  • Chain 'G':
    Compound: Pax5/Ets Binding Site on the mb-1 promoter
  • Chain 'H':
    Compound: Pax5/Ets Binding Site on the mb-1 promoter
  • Chain 'I':
    Compound: Paired Box Protein Pax5
    Species: Homo sapiens [TaxId:9606]
    Gene: PAX5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1k78i1
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1k78A (A:)
mdleknyptprtsrtghggvnqlggvfvngrplpdvvrqrivelahqgvrpcdisrqlrv
shgcvskilgryyetgsikpgviggskpkvatpkvvekiaeykrqnptmfaweirdrlla
ervcdndtvpsvssinriirtkvqqppnq

    Sequence, based on observed residues (ATOM records): (download) 
    >1k78A (A:)
gvnqlggvfvngrplpdvvrqrivelahqgvrpcdisrqlrvshgcvskilgryyetgsi
kpgviggskpkvatpkvvekiaeykrqnptmfaweirdrllaervcdndtvpsvssinri
irtk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1k78B (B:)
gsgpiqlwqfllelltdkscqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyekls
rglryyydkniihktagkryvyrfvcdlqsllgytpeelhamldvkpdad

    Sequence, based on observed residues (ATOM records): (download) 
    >1k78B (B:)
iqlwqfllelltdkscqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyeklsrglr
yyydkniihktagkryvyrfvcdlqsllgytpeelhamldvk

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1k78E (E:)
mdleknyptprtsrtghggvnqlggvfvngrplpdvvrqrivelahqgvrpcdisrqlrv
shgcvskilgryyetgsikpgviggskpkvatpkvvekiaeykrqnptmfaweirdrlla
ervcdndtvpsvssinriirtkvqqppnq

    Sequence, based on observed residues (ATOM records): (download) 
    >1k78E (E:)
gvnqlggvfvngrplpdvvrqrivelahqgvrpcdisrqlrvshgcvskilgryyetgsi
kpgviggskpkvatpkvvekiaeykrqnptmfaweirdrllaervcdndtvpsvssinri
irtk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1k78F (F:)
gsgpiqlwqfllelltdkscqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyekls
rglryyydkniihktagkryvyrfvcdlqsllgytpeelhamldvkpdad

    Sequence, based on observed residues (ATOM records): (download) 
    >1k78F (F:)
piqlwqfllelltdkscqsfiswtgdgwefklsdpdevarrwgkrknkpkmnyeklsrgl
ryyydkniihktagkryvyrfvcdlqsllgytpeelhamldvk

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1k78I (I:)
mdleknyptprtsrtghggvnqlggvfvngrplpdvvrqrivelahqgvrpcdisrqlrv
shgcvskilgryyetgsikpgviggskpkvatpkvvekiaeykrqnptmfaweirdrlla
ervcdndtvpsvssinriirtkvqqppnq

    Sequence, based on observed residues (ATOM records): (download) 
    >1k78I (I:)
ggskpkvatpkvvekiaeykrqnptmfaweirdrllaervcdndtvpsvssinriirt