PDB entry 1k5m

View 1k5m on RCSB PDB site
Description: Crystal Structure of a Human Rhinovirus Type 14:Human Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus MN-III-2
Class: Virus
Keywords: engineered rhinovirus, HIV-1 V3 loop, beta turns, Icosahedral virus
Deposited on 2001-10-11, released 2002-07-17
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.216
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: coat protein vp1 (p1d)
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1k5ma_
  • Chain 'B':
    Compound: CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03303 (Start-158)
      • linker (159-161)
    • Uniprot P05877 (162-173)
    • Uniprot P03303 (174-276)
    Domains in SCOPe 2.06: d1k5m.1
  • Chain 'C':
    Compound: coat protein vp3 (p1c)
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1k5mc_
  • Chain 'D':
    Compound: coat protein vp4 (p1a)
    Species: Human rhinovirus 14 [TaxId:12131]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1k5m.1
  • Heterogens: SPH, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1k5mA (A:)
glgdeleevivektkqtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhf
ngsetdvecflgraacvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelft
yvrfdseytilatasqpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkv
gdtsrfsvpyvglasayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvk
irvyhrakhveawiprapralpytsigrtnypkntepvikkrkgdiksy

    Sequence, based on observed residues (ATOM records): (download) 
    >1k5mA (A:)
eevivektkqtvasissgpkhtqkvpiltanetgatmpvlpsdsietrttymhfngsetd
vecflgraacvhvteiqnkdatgidnhreaklfndwkinlsslvqlrkklelftyvrfds
eytilatasqpdsanyssnlvvqamyvppgapnpkewddytwqsasnpsvffkvgdtsrf
svpyvglasayncfydgyshddaetqygitvlnhmgsmafrivnehdehktlvkirvyhr
akhveawiprapralpytsigrtnypkntepvikkrkgdiksy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1k5mB (B:)
spnveacgysdrvqqitlgnstittqeaanavvcyaewpeylpdvdasdvnktskpdtsv
crfytldsktwttgskgwcwklpdalkdmgvfgqnmffhslgrsgytvhvqcnatkfhsg
cllvvvipehqlasheggnvsvkytfthpgergidlssaadtigpgrafyttknnevggp
vkdviynmngtllgnllifphqfinlrtnntativipyinsvpidsmtrhnnvslmvipi
apltvptgatpslpitvtiapmctefsgirsksivpq

    Sequence, based on observed residues (ATOM records): (download) 
    >1k5mB (B:)
gysdrvqqitlgnstittqeaanavvcyaewpeylpdvdasdvnktskpdtsvcrfytld
sktwttgskgwcwklpdalkdmgvfgqnmffhslgrsgytvhvqcnatkfhsgcllvvvi
pehqlasheggnvsvkytfthpgergidlssaadtigpgrafyttknnevggpvkdviyn
mngtllgnllifphqfinlrtnntativipyinsvpidsmtrhnnvslmvipiapltvpt
gatpslpitvtiapmctefsgirsksivpq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1k5mC (C:)
glptttlpgsgqflttddrqspsalpnyeptprihipgkvhnlleiiqvdtlipmnntht
kdevnsyliplnanrqneqvfgtnlfigdgvfkttllgeivqyythwsgslrfslmytgp
alssaklilaytppgargpqdrreamlgthvvwdiglqstivmtipwtsgvqfrytdpdt
ytsagflscwyqtslilppettgqvyllsfisacpdfklrlmkdtqtisqtvalte

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1k5mD (D:)
gaqvstqksgshenqniltngsnqtftvinyykdaastssagqslsmdpskftepvkdlm
lkgapaln

    Sequence, based on observed residues (ATOM records): (download) 
    >1k5mD (D:)
inyykdaastssagqslsmdpskftepvkdlmlkgapaln