PDB entry 1k3x

View 1k3x on RCSB PDB site
Description: Crystal structure of a trapped reaction intermediate of the DNA repair enzyme Endonuclease VIII with Brominated-DNA
Class: hydrolase/DNA
Keywords: hydrolase/DNA
Deposited on 2001-10-04, released 2002-10-04
The last revision prior to the SCOP 1.75 freeze date was dated 2002-10-04, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.25 Å
R-factor: 0.149
AEROSPACI score: 0.93 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Endonuclease VIII
    Species: Escherichia coli
    Gene: nei
    Database cross-references and differences (RAF-indexed):
    • Uniprot P50465 (0-261)
      • see remark 999 (33)
      • see remark 999 (111)
    Domains in SCOP 1.75: d1k3xa1, d1k3xa2, d1k3xa3
  • Chain 'B':
    Compound: 5'-d(*gp*gp*cp*(bru)p*(bru)p*cp*ap*(bru)p*cp*cp*(bru)p*gp*g)-3'
  • Chain 'C':
    Compound: 5'-d(*cp*cp*ap*gp*gp*ap*(ped)p*gp*ap*ap*gp*cp*c)-3'
  • Heterogens: ZN, SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1k3xA (A:)
pegpeirraadnleaaikgkpltdvwfafpqlktyqsqligqhvthvetrgkallthfsn
dltlyshnqlygvwrvvdtgeepqttrvlrvklqtadktillysasdiemlrpeqltthp
flqrvgpdvldpnltpevvkerllsprfrnrqfagllldqaflaglgnylrveilwqvgl
tgnhkakdlnaaqldalahalleiprfsyatrgqvdenkhhgalfrfkvfhrdgepcerc
gsiiekttlssrpfywcpgcqh

    Sequence, based on observed residues (ATOM records): (download) 
    >1k3xA (A:)
pegpeirraadnleaaikgkpltdvwfafpqlktyqsqligqhvthvetrgkallthfsn
dltlyshnqlygvwrvvdtgeepqttrvlrvklqtadktillysasdiemlrpeqltthp
flqrvgpdvldpnltpevvkerllsprfrnrqfagllldqaflaglgnylrveilwqvgl
tgnhkakdlnaaqldalahalleiprfsyatrgalfrfkvfhrdgepcercgsiiekttl
ssrpfywcpgcqh

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.