PDB entry 1k3w

View 1k3w on RCSB PDB site
Description: Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA
Class: hydrolase/DNA
Keywords: hydrolase/DNA
Deposited on 2001-10-04, released 2002-10-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.42 Å
R-factor: 0.165
AEROSPACI score: 0.69 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Endonuclease VIII
    Species: Escherichia coli [TaxId:562]
    Gene: nei
    Database cross-references and differences (RAF-indexed):
    • Uniprot P50465 (0-261)
      • see remark 999 (33)
      • see remark 999 (111)
    Domains in SCOPe 2.07: d1k3wa1, d1k3wa2, d1k3wa3
  • Chain 'B':
    Compound: 5'-d(*gp*gp*cp*tp*tp*cp*ap*tp*cp*cp*tp*gp*g)-3'
  • Chain 'C':
    Compound: 5'-d(*cp*cp*ap*gp*gp*ap*(ped)p*gp*ap*ap*gp*cp*c)-3'
  • Heterogens: ZN, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1k3wA (A:)
pegpeirraadnleaaikgkpltdvwfafpqlktyqsqligqhvthvetrgkallthfsn
dltlyshnqlygvwrvvdtgeepqttrvlrvklqtadktillysasdiemlrpeqltthp
flqrvgpdvldpnltpevvkerllsprfrnrqfagllldqaflaglgnylrveilwqvgl
tgnhkakdlnaaqldalahalleiprfsyatrgqvdenkhhgalfrfkvfhrdgepcerc
gsiiekttlssrpfywcpgcqh

    Sequence, based on observed residues (ATOM records): (download) 
    >1k3wA (A:)
pegpeirraadnleaaikgkpltdvwfafpqlktyqsqligqhvthvetrgkallthfsn
dltlyshnqlygvwrvvdtgeepqttrvlrvklqtadktillysasdiemlrpeqltthp
flqrvgpdvldpnltpevvkerllsprfrnrqfagllldqaflaglgnylrveilwqvgl
tgnhkakdlnaaqldalahalleiprfsyatrgqalfrfkvfhrdgepcercgsiiektt
lssrpfywcpgcqh

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.