PDB entry 1k28

View 1k28 on RCSB PDB site
Description: The Structure of the Bacteriophage T4 Cell-Puncturing Device
Class: hydrolase/structural protein
Keywords: Triple-stranded beta-helix, OB fold, pseudohexamer, T4 tail lysozyme, HUB, gp27-gp5*-gp5C, HYDROLASE-STRUCTURAL PROTEIN COMPLEX
Deposited on 2001-09-26, released 2002-02-06
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.211
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tail-associated lysozyme
    Species: Enterobacteria phage T4 [TaxId:10665]
    Gene: 5
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16009 (Start-574)
      • expression tag (575)
      • expression tag (582-583)
    Domains in SCOPe 2.07: d1k28a1, d1k28a2, d1k28a3, d1k28a4
  • Chain 'D':
    Compound: Baseplate structural protein Gp27
    Species: Enterobacteria phage T4 [TaxId:10665]
    Gene: 27
    Database cross-references and differences (RAF-indexed):
    • Uniprot P17172
      • modified residue (39)
      • modified residue (50)
      • modified residue (63)
      • modified residue (134)
      • see remark 999 (167)
      • modified residue (192)
      • modified residue (196-197)
      • modified residue (201-202)
      • modified residue (210)
      • modified residue (247)
      • see remark 999 (261)
      • modified residue (264)
      • modified residue (285)
      • modified residue (300)
      • see remark 999 (307)
      • modified residue (356)
    Domains in SCOPe 2.07: d1k28d1, d1k28d2
  • Heterogens: K, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1k28A (A:)
memisnnlnwfvgvvedrmdplklgrvrvrvvglhppqraqgdvmgipteklpwmsviqp
itsaamsgiggsvtgpvegtrvyghfldkwktngivlgtyggivrekpnrlegfsdptgq
yprrlgndtnvlnqggevgydsssnviqdsnldtainpddrplseiptddnpnmsmaeml
rrdeglrlkvywdtegyptigighlimkqpvrdmaqinkvlskqvgreitgnpgsitmee
attlferdladmqrdikshskvgpvwqavnrsrqmalenmafqmgvggvakfntmltaml
agdwekaykagrdslwyqqtkgrasrvtmiiltgnlesygvevktparslsamaatvaks
sdpadppipndsrilfkepvssykgeypyvhtmetesghiqefddtpgqeryrlvhptgt
yeevspsgrrtrktvdnlyditnadgnflvagdkktnvggseiyynmdnrlhqidgsnti
fvrgdetktvegngtilvkgnvtiivegnaditvkgdattlvegnqtntvngnlswkvag
tvdwdvggdwtekmasmssissgqytidgsridigsvdhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1k28A (A:)
nnlnwfvgvvedrmdplklgrvrvrvvglhppqraqgdvmgipteklpwmsviqpitsaa
msgiggsvtgpvegtrvyghfldkwktngivlgtyggivrekpnrlegfsdptgqyprrl
gndtnvlnqggevgydsssnviqdsnldtainpddrplseiptddnpnmsmaemlrrdeg
lrlkvywdtegyptigighlimkqpvrdmaqinkvlskqvgreitgnpgsitmeeattlf
erdladmqrdikshskvgpvwqavnrsrqmalenmafqmgvggvakfntmltamlagdwe
kaykagrdslwyqqtkgrasrvtmiiltgnlesygvevktdpadppipndsrilfkepvs
sykgeypyvhtmetesghiqefddtpgqeryrlvhptgtyeevspsgrrtrktvdnlydi
tnadgnflvagdkktnvggseiyynmdnrlhqidgsntifvrgdetktvegngtilvkgn
vtiivegnaditvkgdattlvegnqtntvngnlswkvagtvdwdvggdwtekmasmssis
sgqytidgsridigshh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1k28D (D:)
msmlqrpgypnlsvklfdsydawsnnrfvelaatittltmrdslygrnegmlqfydskni
htkmdgneiiqisvanandinnvktriygckhfsvsvdskgdniiaielgtihsienlkf
grpffpdagesikemlgviyqdrtlltpainainayvpdipwtstfenylsyvrevalav
gsdkfvfvwqdimgvnmmdydmminqepypmivgepsligqfiqelkyplaydfvwltks
nphkrdpmknatiyahsfldssipmittgkgensivvsrsgaysemtyrngyeeairlqt
maqydgyakcstignfnltpgvkiifndsknqfktefyvdevihelsnnnsvthlymftn
atkletidpvkvknefksdttteessssnkq

    Sequence, based on observed residues (ATOM records): (download) 
    >1k28D (D:)
lqrpgypnlsvklfdsydawsnnrfvelaatittltmrdslygrnegmlqfydsknihtk
mdgneiiqisvanandinnvktriygckhfsvsvdskgdniiaielgtihsienlkfgrp
ffpdagesikemlgviyqdrtlltpainainayvpdipwtstfenylsyvrevalavgsd
kfvfvwqdimgvnmmdydmminqepypmivgepskyplaydfvwltksnphkrdpmknat
iyahsfldssipmittgkgensivvsrsgaysemtyrngyeeairlqtmaqydgyakcst
ignfnltpgvkiifndsknqfktefyvdevihelsnnnsvthlymftnatkletidpvkv
knef