PDB entry 1k01
View 1k01 on RCSB PDB site
Description: Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria
Class: ribosome
Keywords: Ribosome, 50S, 23S, 5S, Antibiotics, Chloramphenicol, Peptidyl transferase center
Deposited on
2001-09-17, released
2001-10-26
The last revision prior to the SCOPe 2.05 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.275
AEROSPACI score: 0.01
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 23s rRNA
Species: Deinococcus radiodurans [TaxId:1299]
- Chain 'K':
Compound: ribosomal protein l4
Species: Deinococcus radiodurans [TaxId:1299]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1k01k_ - Chain 'L':
Compound: ribosomal protein l22
Species: Deinococcus radiodurans [TaxId:1299]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1k01l_ - Chain 'M':
Compound: ribosomal protein l32
Species: Deinococcus radiodurans [TaxId:1299]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d1k01m_ - Heterogens: MG, CLM
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'K':
Sequence, based on SEQRES records: (download)
>1k01K (K:)
maqinvigqnggrtielplpevnsgvlhevvtwqlasrrrgtastrtraqvsktgrkmyg
qkgtgnarhgdrsvptfvgggvafgpkprsydytlprqvrqlglamaiasrqeggklvav
dgfdiadaktknfiswakqngldgtekvllvtddentrraarnvswvsvlpvagvnvydi
lrhdrlvidaaaleiveeeageeqq
Sequence, based on observed residues (ATOM records): (download)
>1k01K (K:)
aqinvigqnggrtielplpevnsgvlhevvtwqlasrrrgtastrtraqvsktgrkmygq
kgtgnarhgdrsvptfvgggvafgpkprsydytlprqvrqlglamaiasrqeggklvavd
gfdiadaktknfiswakqngldgtekvllvtddentrraarnvswvsvlpvagvnvydil
rhdrlvidaaaleivee
- Chain 'L':
Sequence, based on SEQRES records: (download)
>1k01L (L:)
mtapeqtfrnkkqrkqqvklrkpgfavakyvrmsprkvrlvvdvirgksvqdaedllrfi
prsasepvakvlnsakanalhndemledrlfvkeayvdagptlkrliprargsaniikkr
tshitiivaekgnk
Sequence, based on observed residues (ATOM records): (download)
>1k01L (L:)
eqtfrnkkqrkqqvklrkpgfavakyvrmsprkvrlvvdvirgksvqdaedllrfiprsa
sepvakvlnsakanalhndemledrlfvkeayvdagptlkrliprargsaniikkrtshi
tiivaekgnk
- Chain 'M':
Sequence, based on SEQRES records: (download)
>1k01M (M:)
makhpvpkkktskskrdmrrshhaltapnltecpqchgkklshhicpncgyydgrqvlav
Sequence, based on observed residues (ATOM records): (download)
>1k01M (M:)
akhpvpkkktskskrdmrrshhaltapnltecpqchgkklshhicpncgyydgrqvla