PDB entry 1jwm
View 1jwm on RCSB PDB site
Description: Crystal Structure of the Complex of the MHC Class II Molecule HLA-DR1(HA peptide 306-318) with the Superantigen SEC3
Class: immune system
Keywords: HLA-DR1 alpha subunit, HLA-DR1 beta subunit
Deposited on
2001-09-04, released
2003-07-08
The last revision prior to the SCOP 1.73 freeze date was dated
2003-09-30, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.192
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class II histocompatibility antigen, dr alpha chain
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1jwma1, d1jwma2 - Chain 'B':
Compound: hla class II histocompatibility antigen, dr-1 beta chain
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1jwmb1, d1jwmb2 - Chain 'C':
Compound: HA peptide
Species: synthetic, synthetic
- Chain 'D':
Compound: Enterotoxin type C-3
Species: Staphylococcus aureus
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1jwmd1, d1jwmd2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1jwmA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
da
Sequence, based on observed residues (ATOM records): (download)
>1jwmA (A:)
eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefda
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1jwmB (B:)
gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewra
Sequence, based on observed residues (ATOM records): (download)
>1jwmB (B:)
gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqhhnllvcsvsgfy
pgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsvtsp
ltvewra
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1jwmD (D:)
esqpdpmpddlhksseftgtmgnmkylyddhyvsatkvksvdkflahdliynisdkklkn
ydkvktellnedlakkykdevvdvygsnyyvncyfsskdnvgkvtggktcmyggitkheg
nhfdngnlqnvlvrvyenkrntisfevqtdkksvtaqeldikarnflinkknlyefnssp
yetgyikfienngntfwydmmpapgdkfdqskylmmyndnktvdsksvkievhlttkng
Sequence, based on observed residues (ATOM records): (download)
>1jwmD (D:)
esqpdpmpddlhksseftgtmgnmkylyddhyvsatkvksvdkflahdliynisdkklkn
ydkvktellnedlakkykdevvdvygsnyyvncyfsskggktcmyggitkhegnhfdngn
lqnvlvrvyenkrntisfevqtdkksvtaqeldikarnflinkknlyefnsspyetgyik
fienngntfwydmmpapgdkfdqskylmmyndnktvdsksvkievhlttkng