PDB entry 1jso
View 1jso on RCSB PDB site
Description: structure of avian h5 haemagglutinin bound to lstc receptor analog
Class: Viral protein
Keywords: influenza, receptor complex, fusion protein, Viral protein
Deposited on
2001-08-17, released
2001-09-26
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.221
AEROSPACI score: 0.33
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: haemagglutinin (ha1 chain)
Species: Influenza A virus [TaxId:11320]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1jsoa_ - Chain 'B':
Compound: haemagglutinin (ha2 chain)
Species: Influenza A virus [TaxId:11320]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d1jsob_ - Heterogens: NAG, SIA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1jsoA (A:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsvagw
llgnpmcdeflnvpewsyivekdnpvnglcypenfndyeelkhllsstnhfekiriiprs
swsnhdassgvssacpyngrssffrnvvwlikknnayptikrsynntnqedllilwgihh
pndaaeqtklyqnpttyvsvgtstlnqrsvpeiatrpkvngqsgrmeffwtilkpndain
fesngnfiapeyaykivkkggsaimksgleygncntkcqtpmgainssmpfhnihpltig
ecpkyvksgrlvlatglrnvpqret
Sequence, based on observed residues (ATOM records): (download)
>1jsoA (A:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdlngvkplilrdcsvagw
llgnpmcdeflnvpewsyivekdnpvnglcypenfndyeelkhllsstnhfekiriiprs
swsnhdassgvssacpyngrssffrnvvwlikknnayptikrsynntnqedllilwgihh
pndaaeqtklyqnpttyvsvgtstlnqrsvpeiatrpkvngqsgrmeffwtilkpndain
fesngnfiapeyaykivkkggsaimksgleygncntkcqtpmgainssmpfhnihpltig
ecpkyvksgrlvlatglrnvp
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1jsoB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgttnkvnsiidkmn
tqfeavgkefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvkngtydypqyseearlnreeisgv
Sequence, based on observed residues (ATOM records): (download)
>1jsoB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgttnkvnsiidkmn
tqfeavgkefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvkngtydyp