SCOP 1.59: Structural Classification of Proteins — extended

PDB entry 1jro

View 1jro on RCSB PDB site
Description: crystal structure of xanthine dehydrogenase from rhodobacter capsulatus
Deposited on 2001-08-14, released 2002-01-11
The last revision prior to the SCOP 1.59 freeze date was dated 2002-01-11, with a file datestamp of 2002-01-11.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.215
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Domains in SCOP 1.59: d1jroa1, d1jroa2, d1jroa3, d1jroa4
Chain 'B':
Domains in SCOP 1.59: d1jrob1, d1jrob2
Chain 'C':
Domains in SCOP 1.59: d1jroc1, d1jroc2, d1jroc3, d1jroc4
Chain 'D':
Domains in SCOP 1.59: d1jrod1, d1jrod2
Chain 'E':
Domains in SCOP 1.59: d1jroe1, d1jroe2, d1jroe3, d1jroe4
Chain 'F':
Domains in SCOP 1.59: d1jrof1, d1jrof2
Chain 'G':
Domains in SCOP 1.59: d1jrog1, d1jrog2, d1jrog3, d1jrog4
Chain 'H':
Domains in SCOP 1.59: d1jroh1, d1jroh2

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1jroA (A:)
meiafllngetrrvriedptqsllellraegltgtkegcnegdcgactvmirdaagsrav
naclmmlpqiagkalrtiegiaapdgrlhpvqqamidhhgsqcgfctpgfivsmaaahdr
drkdyddllagnlcrctgyapilraaeaaageppadwlqadaaftlaqlssgvrgqtapa
flpetsdaladwylahpeatliaggtdvslwvtkalrdlpevaflshckdlaqiretpdg
ygigagvtiaalrafaegphpalagllrrfaseqvrqvatiggniangspigdgppalia
mgasltlrrgqerrrmpledffleyrkqdrrpgefvesvtlpksapglrcyklskrfdqd
isavcgclnltlkgskietariafggmagvpkraaafeaaligqdfredtiaaalpllaq
dftplsdmrasaayrmnaaqamalryvrelsgeavavlevmp

Sequence, based on observed residues (ATOM records): (download)

>1jroA (A:)
meiafllngetrrvriedptqsllellraegltgtkegcnegdcgactvmirdaagsrav
naclmmlpqiagkalrtiegiaapdgrlhpvqqamidhhgsqcgfctpgfivsmaaahdr
drkdyddllagnlcrctgyapilraaeaaageppadwlqadaaftlpaflpetsdaladw
ylahpeatliaggtdvslwvtkalrdlpevaflshckdlaqiretpdgygigagvtiaal
rafaegphpalagllrrfaseqvrqvatiggniangspigdgppaliamgasltlrrgqe
rrrmpledffleyrkqdrrpgefvesvtlpksapglrcyklskrfdqdisavcgclnltl
kgskietariafggmagvpkraaafeaaligqdfredtiaaalpllaqdftplsdmrasa
ayrmnaaqamalryvrelsgeavavlevmp

Chain 'B':
Sequence, based on SEQRES records: (download)

>1jroB (B:)
svgkplphdsarahvtgqarylddlpcpantlhlafglsteasaaitgldlepvrespgv
iavftaadlphdndaspapspepvlatgevhfvgqpiflvaatshraariaarkaritya
prpailtldqalaadsrfeggpviwargdvetalagaahlaegcfeiggqehfylegqaa
lalpaeggvvihcssqhpseiqhkvahalglafhdvrvemrrmgggfggkesqgnhlaia
cavaaratgrpckmrydrdddmvitgkrhdfriryrigadasgkllgadfvhlarcgwsa
dlslpvcdramlhadgsyfvpalrieshrlrtntqsntafrgfggpqgalgmeraiehla
rgmgrdpaelralnfydppergglsappsppepiatkktqtthygqevadcvlgelvtrl
qksanfttrraeiaawnstnrtlargialspvkfgisftlthlnqagalvqiytdgsval
nhggtemgqglhakmvqvaaavlgidpvqvritatdtskvpntsataassgadmngmavk
dacetlrgrlagfvaaregcaardvifdagqvqasgkswrfaeivaaaymarislsatgf
yatpklswdrlrgqgrpflyfaygaaitevvidrltgenrilrtdilhdagaslnpaldi
gqiegayvqgagwltteelvwdhcgrlmthapstykipafsdrprifnvalwdqpnreet
ifrskavgeppfllgisaflalhdacaacgphwpdlqapatpeavlaavrraegra

Sequence, based on observed residues (ATOM records): (download)

>1jroB (B:)
svgkplphdsarahvtgqarylddlpcpantlhlafglsteasaaitgldlepvrespgv
iavftaadlphdndaspapspepvlatgevhfvgqpiflvaatshraariaarkaritya
prpailtldqalaadsrfeggpviwargdvetalagaahlaegcfeiggqehfylegqaa
lalpaeggvvihcssqhpseiqhkvahalglafhdvrvemrrmgggfggkesqgnhlaia
cavaaratgrpckmrydrdddmvitgkrhdfriryrigadasgkllgadfvhlarcgwsa
dlslpvcdramlhadgsyfvpalrieshrlrtntqsntafrgfggpqgalgmeraiehla
rgmgrdpaelralnfydppekktqtthygqevadcvlgelvtrlqksanfttrraeiaaw
nstnrtlargialspvkfgisftlthlnqagalvqiytdgsvalnhggtemgqglhakmv
qvaaavlgidpvqvritatdtskvpntsataassgadmngmavkdacetlrgrlagfvaa
regcaardvifdagqvqasgkswrfaeivaaaymarislsatgfyatpklswdrlrgqgr
pflyfaygaaitevvidrltgenrilrtdilhdagaslnpaldigqiegayvqgagwltt
eelvwdhcgrlmthapstykipafsdrprifnvalwdqpnreetifrskavgeppfllgi
saflalhdacaacgphwpdlqapatpeavlaavrraegra

Chain 'C':
Sequence, based on SEQRES records: (download)

>1jroC (C:)
meiafllngetrrvriedptqsllellraegltgtkegcnegdcgactvmirdaagsrav
naclmmlpqiagkalrtiegiaapdgrlhpvqqamidhhgsqcgfctpgfivsmaaahdr
drkdyddllagnlcrctgyapilraaeaaageppadwlqadaaftlaqlssgvrgqtapa
flpetsdaladwylahpeatliaggtdvslwvtkalrdlpevaflshckdlaqiretpdg
ygigagvtiaalrafaegphpalagllrrfaseqvrqvatiggniangspigdgppalia
mgasltlrrgqerrrmpledffleyrkqdrrpgefvesvtlpksapglrcyklskrfdqd
isavcgclnltlkgskietariafggmagvpkraaafeaaligqdfredtiaaalpllaq
dftplsdmrasaayrmnaaqamalryvrelsgeavavlevmp

Sequence, based on observed residues (ATOM records): (download)

>1jroC (C:)
meiafllngetrrvriedptqsllellraegltgtkegcnegdcgactvmirdaagsrav
naclmmlpqiagkalrtiegiaapdgrlhpvqqamidhhgsqcgfctpgfivsmaaahdr
drkdyddllagnlcrctgyapilraaeaaageppadwlqadaaftlpaflpetsdaladw
ylahpeatliaggtdvslwvtkalrdlpevaflshckdlaqiretpdgygigagvtiaal
rafaegphpalagllrrfaseqvrqvatiggniangspigdgppaliamgasltlrrgqe
rrrmpledffleyrkqdrrpgefvesvtlpksapglrcyklskrfdqdisavcgclnltl
kgskietariafggmagvpkraaafeaaligqdfredtiaaalpllaqdftplsdmrasa
ayrmnaaqamalryvrelsgeavavlevmp

Chain 'D':
Sequence, based on SEQRES records: (download)

>1jroD (D:)
svgkplphdsarahvtgqarylddlpcpantlhlafglsteasaaitgldlepvrespgv
iavftaadlphdndaspapspepvlatgevhfvgqpiflvaatshraariaarkaritya
prpailtldqalaadsrfeggpviwargdvetalagaahlaegcfeiggqehfylegqaa
lalpaeggvvihcssqhpseiqhkvahalglafhdvrvemrrmgggfggkesqgnhlaia
cavaaratgrpckmrydrdddmvitgkrhdfriryrigadasgkllgadfvhlarcgwsa
dlslpvcdramlhadgsyfvpalrieshrlrtntqsntafrgfggpqgalgmeraiehla
rgmgrdpaelralnfydppergglsappsppepiatkktqtthygqevadcvlgelvtrl
qksanfttrraeiaawnstnrtlargialspvkfgisftlthlnqagalvqiytdgsval
nhggtemgqglhakmvqvaaavlgidpvqvritatdtskvpntsataassgadmngmavk
dacetlrgrlagfvaaregcaardvifdagqvqasgkswrfaeivaaaymarislsatgf
yatpklswdrlrgqgrpflyfaygaaitevvidrltgenrilrtdilhdagaslnpaldi
gqiegayvqgagwltteelvwdhcgrlmthapstykipafsdrprifnvalwdqpnreet
ifrskavgeppfllgisaflalhdacaacgphwpdlqapatpeavlaavrraegra

Sequence, based on observed residues (ATOM records): (download)

>1jroD (D:)
svgkplphdsarahvtgqarylddlpcpantlhlafglsteasaaitgldlepvrespgv
iavftaadlphdndaspapspepvlatgevhfvgqpiflvaatshraariaarkaritya
prpailtldqalaadsrfeggpviwargdvetalagaahlaegcfeiggqehfylegqaa
lalpaeggvvihcssqhpseiqhkvahalglafhdvrvemrrmgggfggkesqgnhlaia
cavaaratgrpckmrydrdddmvitgkrhdfriryrigadasgkllgadfvhlarcgwsa
dlslpvcdramlhadgsyfvpalrieshrlrtntqsntafrgfggpqgalgmeraiehla
rgmgrdpaelralnfydppekktqtthygqevadcvlgelvtrlqksanfttrraeiaaw
nstnrtlargialspvkfgisftlthlnqagalvqiytdgsvalnhggtemgqglhakmv
qvaaavlgidpvqvritatdtskvpntsataassgadmngmavkdacetlrgrlagfvaa
regcaardvifdagqvqasgkswrfaeivaaaymarislsatgfyatpklswdrlrgqgr
pflyfaygaaitevvidrltgenrilrtdilhdagaslnpaldigqiegayvqgagwltt
eelvwdhcgrlmthapstykipafsdrprifnvalwdqpnreetifrskavgeppfllgi
saflalhdacaacgphwpdlqapatpeavlaavrraegra

Chain 'E':
Sequence, based on SEQRES records: (download)

>1jroE (E:)
meiafllngetrrvriedptqsllellraegltgtkegcnegdcgactvmirdaagsrav
naclmmlpqiagkalrtiegiaapdgrlhpvqqamidhhgsqcgfctpgfivsmaaahdr
drkdyddllagnlcrctgyapilraaeaaageppadwlqadaaftlaqlssgvrgqtapa
flpetsdaladwylahpeatliaggtdvslwvtkalrdlpevaflshckdlaqiretpdg
ygigagvtiaalrafaegphpalagllrrfaseqvrqvatiggniangspigdgppalia
mgasltlrrgqerrrmpledffleyrkqdrrpgefvesvtlpksapglrcyklskrfdqd
isavcgclnltlkgskietariafggmagvpkraaafeaaligqdfredtiaaalpllaq
dftplsdmrasaayrmnaaqamalryvrelsgeavavlevmp

Sequence, based on observed residues (ATOM records): (download)

>1jroE (E:)
meiafllngetrrvriedptqsllellraegltgtkegcnegdcgactvmirdaagsrav
naclmmlpqiagkalrtiegiaapdgrlhpvqqamidhhgsqcgfctpgfivsmaaahdr
drkdyddllagnlcrctgyapilraaeaaageppadwlqadaaftlpaflpetsdaladw
ylahpeatliaggtdvslwvtkalrdlpevaflshckdlaqiretpdgygigagvtiaal
rafaegphpalagllrrfaseqvrqvatiggniangspigdgppaliamgasltlrrgqe
rrrmpledffleyrkqdrrpgefvesvtlpksapglrcyklskrfdqdisavcgclnltl
kgskietariafggmagvpkraaafeaaligqdfredtiaaalpllaqdftplsdmrasa
ayrmnaaqamalryvrelsgeavavlevmp

Chain 'F':
Sequence, based on SEQRES records: (download)

>1jroF (F:)
svgkplphdsarahvtgqarylddlpcpantlhlafglsteasaaitgldlepvrespgv
iavftaadlphdndaspapspepvlatgevhfvgqpiflvaatshraariaarkaritya
prpailtldqalaadsrfeggpviwargdvetalagaahlaegcfeiggqehfylegqaa
lalpaeggvvihcssqhpseiqhkvahalglafhdvrvemrrmgggfggkesqgnhlaia
cavaaratgrpckmrydrdddmvitgkrhdfriryrigadasgkllgadfvhlarcgwsa
dlslpvcdramlhadgsyfvpalrieshrlrtntqsntafrgfggpqgalgmeraiehla
rgmgrdpaelralnfydppergglsappsppepiatkktqtthygqevadcvlgelvtrl
qksanfttrraeiaawnstnrtlargialspvkfgisftlthlnqagalvqiytdgsval
nhggtemgqglhakmvqvaaavlgidpvqvritatdtskvpntsataassgadmngmavk
dacetlrgrlagfvaaregcaardvifdagqvqasgkswrfaeivaaaymarislsatgf
yatpklswdrlrgqgrpflyfaygaaitevvidrltgenrilrtdilhdagaslnpaldi
gqiegayvqgagwltteelvwdhcgrlmthapstykipafsdrprifnvalwdqpnreet
ifrskavgeppfllgisaflalhdacaacgphwpdlqapatpeavlaavrraegra

Sequence, based on observed residues (ATOM records): (download)

>1jroF (F:)
svgkplphdsarahvtgqarylddlpcpantlhlafglsteasaaitgldlepvrespgv
iavftaadlphdndaspapspepvlatgevhfvgqpiflvaatshraariaarkaritya
prpailtldqalaadsrfeggpviwargdvetalagaahlaegcfeiggqehfylegqaa
lalpaeggvvihcssqhpseiqhkvahalglafhdvrvemrrmgggfggkesqgnhlaia
cavaaratgrpckmrydrdddmvitgkrhdfriryrigadasgkllgadfvhlarcgwsa
dlslpvcdramlhadgsyfvpalrieshrlrtntqsntafrgfggpqgalgmeraiehla
rgmgrdpaelralnfydppekktqtthygqevadcvlgelvtrlqksanfttrraeiaaw
nstnrtlargialspvkfgisftlthlnqagalvqiytdgsvalnhggtemgqglhakmv
qvaaavlgidpvqvritatdtskvpntsataassgadmngmavkdacetlrgrlagfvaa
regcaardvifdagqvqasgkswrfaeivaaaymarislsatgfyatpklswdrlrgqgr
pflyfaygaaitevvidrltgenrilrtdilhdagaslnpaldigqiegayvqgagwltt
eelvwdhcgrlmthapstykipafsdrprifnvalwdqpnreetifrskavgeppfllgi
saflalhdacaacgphwpdlqapatpeavlaavrraegra

Chain 'G':
Sequence, based on SEQRES records: (download)

>1jroG (G:)
meiafllngetrrvriedptqsllellraegltgtkegcnegdcgactvmirdaagsrav
naclmmlpqiagkalrtiegiaapdgrlhpvqqamidhhgsqcgfctpgfivsmaaahdr
drkdyddllagnlcrctgyapilraaeaaageppadwlqadaaftlaqlssgvrgqtapa
flpetsdaladwylahpeatliaggtdvslwvtkalrdlpevaflshckdlaqiretpdg
ygigagvtiaalrafaegphpalagllrrfaseqvrqvatiggniangspigdgppalia
mgasltlrrgqerrrmpledffleyrkqdrrpgefvesvtlpksapglrcyklskrfdqd
isavcgclnltlkgskietariafggmagvpkraaafeaaligqdfredtiaaalpllaq
dftplsdmrasaayrmnaaqamalryvrelsgeavavlevmp

Sequence, based on observed residues (ATOM records): (download)

>1jroG (G:)
meiafllngetrrvriedptqsllellraegltgtkegcnegdcgactvmirdaagsrav
naclmmlpqiagkalrtiegiaapdgrlhpvqqamidhhgsqcgfctpgfivsmaaahdr
drkdyddllagnlcrctgyapilraaeaaageppadwlqadaaftlpaflpetsdaladw
ylahpeatliaggtdvslwvtkalrdlpevaflshckdlaqiretpdgygigagvtiaal
rafaegphpalagllrrfaseqvrqvatiggniangspigdgppaliamgasltlrrgqe
rrrmpledffleyrkqdrrpgefvesvtlpksapglrcyklskrfdqdisavcgclnltl
kgskietariafggmagvpkraaafeaaligqdfredtiaaalpllaqdftplsdmrasa
ayrmnaaqamalryvrelsgeavavlevmp

Chain 'H':
Sequence, based on SEQRES records: (download)

>1jroH (H:)
svgkplphdsarahvtgqarylddlpcpantlhlafglsteasaaitgldlepvrespgv
iavftaadlphdndaspapspepvlatgevhfvgqpiflvaatshraariaarkaritya
prpailtldqalaadsrfeggpviwargdvetalagaahlaegcfeiggqehfylegqaa
lalpaeggvvihcssqhpseiqhkvahalglafhdvrvemrrmgggfggkesqgnhlaia
cavaaratgrpckmrydrdddmvitgkrhdfriryrigadasgkllgadfvhlarcgwsa
dlslpvcdramlhadgsyfvpalrieshrlrtntqsntafrgfggpqgalgmeraiehla
rgmgrdpaelralnfydppergglsappsppepiatkktqtthygqevadcvlgelvtrl
qksanfttrraeiaawnstnrtlargialspvkfgisftlthlnqagalvqiytdgsval
nhggtemgqglhakmvqvaaavlgidpvqvritatdtskvpntsataassgadmngmavk
dacetlrgrlagfvaaregcaardvifdagqvqasgkswrfaeivaaaymarislsatgf
yatpklswdrlrgqgrpflyfaygaaitevvidrltgenrilrtdilhdagaslnpaldi
gqiegayvqgagwltteelvwdhcgrlmthapstykipafsdrprifnvalwdqpnreet
ifrskavgeppfllgisaflalhdacaacgphwpdlqapatpeavlaavrraegra

Sequence, based on observed residues (ATOM records): (download)

>1jroH (H:)
svgkplphdsarahvtgqarylddlpcpantlhlafglsteasaaitgldlepvrespgv
iavftaadlphdndaspapspepvlatgevhfvgqpiflvaatshraariaarkaritya
prpailtldqalaadsrfeggpviwargdvetalagaahlaegcfeiggqehfylegqaa
lalpaeggvvihcssqhpseiqhkvahalglafhdvrvemrrmgggfggkesqgnhlaia
cavaaratgrpckmrydrdddmvitgkrhdfriryrigadasgkllgadfvhlarcgwsa
dlslpvcdramlhadgsyfvpalrieshrlrtntqsntafrgfggpqgalgmeraiehla
rgmgrdpaelralnfydppekktqtthygqevadcvlgelvtrlqksanfttrraeiaaw
nstnrtlargialspvkfgisftlthlnqagalvqiytdgsvalnhggtemgqglhakmv
qvaaavlgidpvqvritatdtskvpntsataassgadmngmavkdacetlrgrlagfvaa
regcaardvifdagqvqasgkswrfaeivaaaymarislsatgfyatpklswdrlrgqgr
pflyfaygaaitevvidrltgenrilrtdilhdagaslnpaldigqiegayvqgagwltt
eelvwdhcgrlmthapstykipafsdrprifnvalwdqpnreetifrskavgeppfllgi
saflalhdacaacgphwpdlqapatpeavlaavrraegra