SCOP: Structural Classification of Proteins and ASTRAL

Structural Classification of Proteins and ASTRAL release 1.75B (January 2013)

PDB entry 1jre

View 1jre on RCSB PDB site
Description: DNA protection and binding by e. coli dps protein
Class: DNA binding protein
Keywords: dodecamer, metal bound complex, DNA binding protein
Deposited on 2001-08-13, released 2003-06-17
The last revision prior to the SCOP 1.75B freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.229
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jrea_
Chain 'B':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jreb_
Chain 'C':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jrec_
Chain 'D':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jred_
Chain 'E':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jree_
Chain 'F':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jref_
Chain 'G':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jreg_
Chain 'H':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jreh_
Chain 'I':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jrei_
Chain 'J':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jrej_
Chain 'K':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jrek_
Chain 'L':
Compound: DNA protection during starvation protein
Species: Escherichia coli [TaxId:562]
Domains in SCOP 1.75B: d1jrel_
Heterogens: CD, TRS, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1jreA (A:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreA (A:)
atnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfr
talichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivan
dvrkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'B':
Sequence, based on SEQRES records: (download)

>1jreB (B:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreB (B:)
atnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfr
talichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivan
dvrkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'C':
Sequence, based on SEQRES records: (download)

>1jreC (C:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreC (C:)
nllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrta
lichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandv
rkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'D':
Sequence, based on SEQRES records: (download)

>1jreD (D:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreD (D:)
atnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfr
talichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivan
dvrkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'E':
Sequence, based on SEQRES records: (download)

>1jreE (E:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreE (E:)
tnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrt
alichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivand
vrkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'F':
Sequence, based on SEQRES records: (download)

>1jreF (F:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreF (F:)
tnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrt
alichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivand
vrkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'G':
Sequence, based on SEQRES records: (download)

>1jreG (G:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreG (G:)
nllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrta
lichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandv
rkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'H':
Sequence, based on SEQRES records: (download)

>1jreH (H:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreH (H:)
atnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfr
talichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivan
dvrkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'I':
Sequence, based on SEQRES records: (download)

>1jreI (I:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreI (I:)
tnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrt
alichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivand
vrkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'J':
Sequence, based on SEQRES records: (download)

>1jreJ (J:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreJ (J:)
nllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrta
lichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandv
rkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'K':
Sequence, based on SEQRES records: (download)

>1jreK (K:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreK (K:)
nllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrta
lichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandv
rkaigeakdddtadiltaasrdldkflwfiesnie

Chain 'L':
Sequence, based on SEQRES records: (download)

>1jreL (L:)
mstaklvkskatnllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfi
avhemldgfrtalichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlke
ladryaivandvrkaigeakdddtadiltaasrdldkflwfiesnie

Sequence, based on observed residues (ATOM records): (download)

>1jreL (L:)
nllytrndvsdsekkatvellnrqviqfidlslitkqahwnmrganfiavhemldgfrta
lichlatmaeravqlggvalgttqvinsktplksypldihnvqdhlkeladryaivandv
rkaigeakdddtadiltaasrdldkflwfiesnie

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scop@mrc-lmb.cam.ac.uk and astral@compbio.berkeley.edu