PDB entry 1jpl
View 1jpl on RCSB PDB site
Description: GGA3 VHS domain complexed with C-terminal peptide from cation-independent mannose 6-phosphate receptor
Class: signaling protein
Keywords: Protein-peptide complex; VHS domain; DXXLL sorting signal, SIGNALING PROTEIN
Deposited on
2001-08-02, released
2002-02-27
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.213
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ADP-ribosylation factor binding protein gga3
Species: Homo sapiens [TaxId:9606]
Gene: GGA3
Database cross-references and differences (RAF-indexed):
- Uniprot Q9NZ52 (5-End)
- cloning artifact (1-4)
- modified residue (5)
- modified residue (77)
- modified residue (127)
- modified residue (141)
Domains in SCOPe 2.08: d1jpla1, d1jpla2 - Chain 'B':
Compound: ADP-ribosylation factor binding protein gga3
Species: Homo sapiens [TaxId:9606]
Gene: GGA3
Database cross-references and differences (RAF-indexed):
- Uniprot Q9NZ52 (5-End)
- cloning artifact (2-4)
- modified residue (5)
- modified residue (77)
- modified residue (127)
- modified residue (141)
Domains in SCOPe 2.08: d1jplb1, d1jplb2 - Chain 'C':
Compound: ADP-ribosylation factor binding protein gga3
Species: Homo sapiens [TaxId:9606]
Gene: GGA3
Database cross-references and differences (RAF-indexed):
- Uniprot Q9NZ52 (5-End)
- cloning artifact (2-4)
- modified residue (5)
- modified residue (77)
- modified residue (127)
- modified residue (141)
Domains in SCOPe 2.08: d1jplc1, d1jplc2 - Chain 'D':
Compound: ADP-ribosylation factor binding protein gga3
Species: Homo sapiens [TaxId:9606]
Gene: GGA3
Database cross-references and differences (RAF-indexed):
- Uniprot Q9NZ52 (5-End)
- cloning artifact (1-4)
- modified residue (5)
- modified residue (77)
- modified residue (127)
- modified residue (141)
Domains in SCOPe 2.08: d1jpld1, d1jpld2 - Chain 'E':
Compound: Cation-Independent Mannose 6-phosphate receptor
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Cation-Independent Mannose 6-phosphate receptor
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: Cation-Independent Mannose 6-phosphate receptor
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Cation-Independent Mannose 6-phosphate receptor
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1jplA (A:)
gamgsmaeaegesleswlnkatnpsnrqedweyiigfcdqinkelegpqiavrllahkiq
spqewealqaltvleacmkncgrrfhnevgkfrflnelikvvspkylgdrvsekvktkvi
ellyswtmalpeeakikdayhmlkrqgivqsdppipvdrtlipsppprpkn
Sequence, based on observed residues (ATOM records): (download)
>1jplA (A:)
amgsmaeaegesleswlnkatnpsnrqedweyiigfcdqinkelegpqiavrllahkiqs
pqewealqaltvleacmkncgrrfhnevgkfrflnelikvvspkylgdrvsekvktkvie
llyswtmalpeeakikdayhmlkrqgivqsdppipvdrtli
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1jplB (B:)
gamgsmaeaegesleswlnkatnpsnrqedweyiigfcdqinkelegpqiavrllahkiq
spqewealqaltvleacmkncgrrfhnevgkfrflnelikvvspkylgdrvsekvktkvi
ellyswtmalpeeakikdayhmlkrqgivqsdppipvdrtlipsppprpkn
Sequence, based on observed residues (ATOM records): (download)
>1jplB (B:)
mgsmaeaegesleswlnkatnpsnrqedweyiigfcdqinkelegpqiavrllahkiqsp
qewealqaltvleacmkncgrrfhnevgkfrflnelikvvspkylgdrvsekvktkviel
lyswtmalpeeakikdayhmlkrqgivqsdppipvdrtl
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1jplC (C:)
gamgsmaeaegesleswlnkatnpsnrqedweyiigfcdqinkelegpqiavrllahkiq
spqewealqaltvleacmkncgrrfhnevgkfrflnelikvvspkylgdrvsekvktkvi
ellyswtmalpeeakikdayhmlkrqgivqsdppipvdrtlipsppprpkn
Sequence, based on observed residues (ATOM records): (download)
>1jplC (C:)
mgsmaeaegesleswlnkatnpsnrqedweyiigfcdqinkelegpqiavrllahkiqsp
qewealqaltvleacmkncgrrfhnevgkfrflnelikvvspkylgdrvsekvktkviel
lyswtmalpeeakikdayhmlkrqgivqsdppipvdrtl
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1jplD (D:)
gamgsmaeaegesleswlnkatnpsnrqedweyiigfcdqinkelegpqiavrllahkiq
spqewealqaltvleacmkncgrrfhnevgkfrflnelikvvspkylgdrvsekvktkvi
ellyswtmalpeeakikdayhmlkrqgivqsdppipvdrtlipsppprpkn
Sequence, based on observed residues (ATOM records): (download)
>1jplD (D:)
amgsmaeaegesleswlnkatnpsnrqedweyiigfcdqinkelegpqiavrllahkiqs
pqewealqaltvleacmkncgrrfhnevgkfrflnelikvvspkylgdrvsekvktkvie
llyswtmalpeeakikdayhmlkrqgivqsdppipvdrtli
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.