PDB entry 1jpf
View 1jpf on RCSB PDB site
Description: Crystal Structure Of The LCMV Peptidic Epitope Gp276 In Complex With The Murine Class I Mhc Molecule H-2Db
Class: immune system
Keywords: Ig fold
Deposited on
2001-08-02, released
2001-10-24
The last revision prior to the SCOP 1.75 freeze date was dated
2002-12-18, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.18 Å
R-factor: 0.211
AEROSPACI score: 0.46
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: H-2 class I histocompatibility antigen, D-B alpha chain
Species: MUS MUSCULUS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1jpfa1, d1jpfa2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: MUS MUSCULUS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1jpfb_ - Chain 'C':
Compound: LCMV peptidic epitope gp276
Species: synthetic, synthetic
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1jpfA (A:)
mgphsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpey
weretqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfaye
grdyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatl
lrtdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdg
tfqkwasvvvplgkeqnytcrvyheglpepltlrwepppst
Sequence, based on observed residues (ATOM records): (download)
>1jpfA (A:)
phsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeywe
retqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayegr
dyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatllr
tdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtf
qkwasvvvplgkeqnytcrvyheglpepltlrwep
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1jpfB (B:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>1jpfB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhdsmaepktvywdrdm
- Chain 'C':
No sequence available.