PDB entry 1jma
View 1jma on RCSB PDB site
Description: crystal structure of the herpes simplex virus glycoprotein d bound to the cellular receptor hvea/hvem
Class: Viral protein
Keywords: V-type Ig molecule and TNFR superfamily, Viral protein
Deposited on
2001-07-17, released
2001-09-26
The last revision prior to the SCOPe 2.07 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.236
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: glycoprotein d
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1jmaa_ - Chain 'B':
Compound: herpesvirus entry mediator
Species: Human herpesvirus 1 [TaxId:10298]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1jmab1, d1jmab2 - Heterogens: SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1jmaA (A:)
kyaladaslkmadpnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvyya
vleracrsvllnapseapqivrgasedvrkqpynltiawfrmggncaipitvmeytecsy
nkslgacpirtqprwnyydsfsavsednlgflmhapafetagtylrlvkindwteitqfi
lehrakgsckyalplrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslkiag
whgpkapytstllppelsetpnatqpelapedpedsalledpvgthhhhh
Sequence, based on observed residues (ATOM records): (download)
>1jmaA (A:)
kyaladaslkmadpnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvyya
vleracrsvllnapseapqivrgasedvrkqpynltiawfrmggncaipitvmeytecsy
nkslgacpirtqprwnyydsfsavsednlgflmhapafetagtylrlvkindwteitqfi
lehrakgsckyalplrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslkiag
whgpkapytstllppelse
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1jmaB (B:)
lpsckedeypvgseccpkcspgyrvkeacgeltgtvcepcppgtyiahlnglskclqcqm
cdpamglrasrncsrtenavcgcspghfcivqdgdhcaacrayatsspgqrvqkggtesq
dtlcqncppgtfspngtleecqhqtkcswlvtkagagtssshhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1jmaB (B:)
ckedeypvgseccpkcspgyrvkeacgeltgtvcepcppgtyiahlnglskclqcqmcdp
amglrasrncsrtenavcgcspghfcivqdhcaacrayat