PDB entry 1jgd

View 1jgd on RCSB PDB site
Description: HLA-B*2709 bound to deca-peptide s10R
Class: immune system
Keywords: MHC (Major Histocompatibility Complex), HLA (Human Leukocyte Antigen)
Deposited on 2001-06-25, released 2003-07-01
The last revision prior to the SCOP 1.75 freeze date was dated 2004-01-13, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.17
AEROSPACI score: 0.63 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: human lymphocyte antigen hla-b27
    Species: HOMO SAPIENS
    Gene: HLA-B or HLAB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1jgda1, d1jgda2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: HOMO SAPIENS
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • cloning artifact (0)
    Domains in SCOP 1.75: d1jgdb_
  • Chain 'C':
    Compound: peptide s10R
    Species: synthetic, synthetic
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1jgdA (A:)
gshsmryfhtsvsrpgrgeprfitvgyvddtlfvrfdsdaaspreeprapwieqegpeyw
dretqickakaqtdredlrtllryynqseagshtlqnmygcdvgpdgrllrgyhqhaydg
kdyialnedlsswtaadtaaqitqrkweaarvaeqlraylegecvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwep

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1jgdB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    No sequence available.