PDB entry 1jgd
View 1jgd on RCSB PDB site
Description: HLA-B*2709 bound to deca-peptide s10R
Class: immune system
Keywords: MHC (Major Histocompatibility Complex), HLA (Human Leukocyte Antigen)
Deposited on
2001-06-25, released
2003-07-01
The last revision prior to the SCOP 1.73 freeze date was dated
2004-01-13, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.17
AEROSPACI score: 0.51
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: human lymphocyte antigen hla-b27
Species: HOMO SAPIENS
Gene: HLA-B or HLAB
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1jgda1, d1jgda2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: HOMO SAPIENS
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1jgdb_ - Chain 'C':
Compound: peptide s10R
Species: synthetic, synthetic
- Heterogens: GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1jgdA (A:)
gshsmryfhtsvsrpgrgeprfitvgyvddtlfvrfdsdaaspreeprapwieqegpeyw
dretqickakaqtdredlrtllryynqseagshtlqnmygcdvgpdgrllrgyhqhaydg
kdyialnedlsswtaadtaaqitqrkweaarvaeqlraylegecvewlrrylengketlq
radppkthvthhpisdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1jgdB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.