PDB entry 1jcl

View 1jcl on RCSB PDB site
Description: observation of covalent intermediates in an enzyme mechanism at atomic resolution
Class: lyase
Keywords: alpha-beta TIM barrel, LYASE
Deposited on 2001-06-09, released 2001-10-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.05 Å
R-factor: 0.143
AEROSPACI score: 0.98 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxyribose-phosphate aldolase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6L0 (1-End)
      • cloning artifact (0)
    Domains in SCOPe 2.07: d1jcla1, d1jcla2
  • Chain 'B':
    Compound: deoxyribose-phosphate aldolase
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6L0 (1-End)
      • cloning artifact (0)
    Domains in SCOPe 2.07: d1jclb1, d1jclb2
  • Heterogens: HPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1jclA (A:)
hmtdlkasslralklmdlttlndddtdekvialchqaktpvgntaaiciyprfipiarkt
lkeqgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgf
dlvkackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatp
esarimmevirdmgvektvgfkpaggvrtaedaqkylaiadelfgadwadarhyrfgass
llasllkalghgdgksassy

    Sequence, based on observed residues (ATOM records): (download) 
    >1jclA (A:)
hmtdlkasslralklmdlttlndddtdekvialchqaktpvgntaaiciyprfipiarkt
lkeqgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgf
dlvkackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatp
esarimmevirdmgvektvgfkpaggvrtaedaqkylaiadelfgadwadarhyrfgass
llasllkalghg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1jclB (B:)
hmtdlkasslralklmdlttlndddtdekvialchqaktpvgntaaiciyprfipiarkt
lkeqgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgf
dlvkackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatp
esarimmevirdmgvektvgfkpaggvrtaedaqkylaiadelfgadwadarhyrfgass
llasllkalghgdgksassy

    Sequence, based on observed residues (ATOM records): (download) 
    >1jclB (B:)
hmtdlkasslralklmdlttlndddtdekvialchqaktpvgntaaiciyprfipiarkt
lkeqgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgf
dlvkackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatp
esarimmevirdmgvektvgfkpaggvrtaedaqkylaiadelfgadwadarhyrfgass
llasllkalgh