PDB entry 1j8h
View 1j8h on RCSB PDB site
Description: Crystal Structure of a Complex of a Human alpha/beta-T cell Receptor, Influenza HA Antigen Peptide, and MHC Class II Molecule, HLA-DR4
Class: immune system
Keywords: protein-protein complex, immunoglobulin fold, IMMUNE SYSTEM
Deposited on
2001-05-21, released
2002-03-13
The last revision prior to the SCOPe 2.06 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-25.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.211
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class II histocompatibility antigen, dr alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1j8ha1, d1j8ha2 - Chain 'B':
Compound: hla class II histocompatibility antigen, dr-4 beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1j8hb1, d1j8hb2 - Chain 'C':
Compound: hemagglutinin ha1 peptide chain
Species: Influenzavirus A [TaxId:197911]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: T-cell receptor alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1j8hd1, d1j8hd2 - Chain 'E':
Compound: T-cell receptor beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1j8he1, d1j8he2 - Heterogens: NAG, NDG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1j8hA (A:)
ikeehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgal
aniavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvt
wlrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwef
d
Sequence, based on observed residues (ATOM records): (download)
>1j8hA (A:)
keehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgala
niavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtw
lrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1j8hB (B:)
gdtrprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaey
wnsqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypaktqplqhhnllvcsvn
gfypgsievrwfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewrars
Sequence, based on observed residues (ATOM records): (download)
>1j8hB (B:)
trprfleqvkhechffngtervrfldryfyhqeeyvrfdsdvgeyravtelgrpdaeywn
sqkdlleqkraavdtycrhnygvgesftvqrrvypevtvypanllvcsvngfypgsievr
wfrngqeektgvvstgliqngdwtfqtlvmletvprsgevytcqvehpsvtspltvewra
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1j8hD (D:)
qsvtqlgshvsvsegalvllrcnysssvppylfwyvqypnqglqlllkytsaatlvkgin
gfeaefkksetsfhltkpsahmsdaaeyfcavsespfgnekltfgtgtrltiipniqnpd
pavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdktvldmrsmdfksnsavaws
nksdfacanafnnsiipedtffpspesscdvk
Sequence, based on observed residues (ATOM records): (download)
>1j8hD (D:)
qsvtqlgshvsvsegalvllrcnysssvppylfwyvqypnqglqlllkytsaatlvkgin
gfeaefkksetsfhltkpsahmsdaaeyfcavsespfgnekltfgtgtrltiipniqnpd
pavyqlrssdksvclftdfdsqtnvsqskdsdvyitdktvldmrsmdfksnsavawsnks
dfacanafnnsiipedtf
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1j8hE (E:)
vkvtqssrylvkrtgekvflecvqdmdhenmfwyrqdpglglrliyfsydvkmkekgdip
egysvsrekkerfslilesastnqtsmylcassstglpygytfgsgtrltvvedlnkvfp
pevavfepseaeishtqkatlvclatgffpdhvelswwvngkevhsgvstdpqplkeqpa
lndsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgr
adcgft
Sequence, based on observed residues (ATOM records): (download)
>1j8hE (E:)
vkvtqssrylvkrtgekvflecvqdmdhenmfwyrqdpglglrliyfsydvkmkekgdip
egysvsrekkerfslilesastnqtsmylcassstglpygytfgsgtrltvvedlnkvfp
pevavfepseaeishtqkatlvclatgffpdhvelswwvngkevhsgvstdpqplkeqpa
lndsryslssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgr
a