PDB entry 1j5v

View 1j5v on RCSB PDB site
Description: Crystal structure of 2-keto-3-deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.3 A resolution
Class: transferase
Keywords: STRUCTURAL GENOMICS, TM0067, 2-KETO-3-DEOXYGLUCONATE KINASE, JCSG, PSI, Protein Structure Initiative, Joint Center for Structural Genomics
Deposited on 2002-07-05, released 2002-07-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2006-02-28, with a file datestamp of 2007-06-01.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.206
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 2-keto-3-deoxygluconate kinase
    Species: Thermotoga maritima
    Gene: tm0067
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WXS2 (12-End)
      • his tag (9-11)
      • modified residue (12)
      • modified residue (21)
      • modified residue (56)
      • modified residue (192)
      • modified residue (196)
      • modified residue (266)
      • modified residue (303)
    Domains in SCOPe 2.08: d1j5va1, d1j5va2
  • Chain 'B':
    Compound: 2-keto-3-deoxygluconate kinase
    Species: Thermotoga maritima
    Gene: tm0067
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WXS2 (12-End)
      • his tag (11)
      • modified residue (12)
      • modified residue (21)
      • modified residue (56)
      • modified residue (192)
      • modified residue (196)
      • modified residue (266)
      • modified residue (303)
    Domains in SCOPe 2.08: d1j5vb1, d1j5vb2
  • Chain 'C':
    Compound: 2-keto-3-deoxygluconate kinase
    Species: Thermotoga maritima
    Gene: tm0067
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WXS2 (12-End)
      • his tag (9-11)
      • modified residue (12)
      • modified residue (21)
      • modified residue (56)
      • modified residue (192)
      • modified residue (196)
      • modified residue (266)
      • modified residue (303)
  • Chain 'D':
    Compound: 2-keto-3-deoxygluconate kinase
    Species: Thermotoga maritima
    Gene: tm0067
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9WXS2 (12-End)
      • his tag (11)
      • modified residue (12)
      • modified residue (21)
      • modified residue (56)
      • modified residue (192)
      • modified residue (196)
      • modified residue (266)
      • modified residue (303)
  • Heterogens: NI, ZN3, NI1, OF1, NI3, 2OF, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1j5vA (A:)
mgsdkihhhhhhmkvvtfgeimlrlsppdhkrifqtdsfdvtyggaeanvaaflaqmgld
ayfvtklpnnplgdaaaghlrkfgvktdyiarggnrigiyfleigasqrpskvvydrahs
aiseakredfdwekildgarwfhfsgitpplgkelpliledalkvanekgvtvscdlnyr
arlwtkeeaqkvmipfmeyvdvlianeediekvlgisvegldlktgklnreayakiaeev
trkynfktvgitlresisatvnywsvmvfengqphfsnryeihivdrvgagdsfagaliy
gslmgfdsqkkaefaaaasclkhtipgdfvvlsieeieklasgatsgrver

    Sequence, based on observed residues (ATOM records): (download) 
    >1j5vA (A:)
hhhmkvvtfgeimlrlsppdhkrifqtdsfdvtyggaeanvaaflaqmgldayfvtklpn
nplgdaaaghlrkfgvktdyiarggnrigiyfleigasqrpskvvydrahsaiseakred
fdwekildgarwfhfsgitpplgkelpliledalkvanekgvtvscdlnyrarlwtkeea
qkvmipfmeyvdvlianeediekvlgisnreayakiaeevtrkynfktvgitlresisat
vnywsvmvfengqphfsnryeihivdrvgagdsfagaliygslmgfdsqkkaefaaaasc
lkhtipgdfvvlsieeieklas

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1j5vB (B:)
mgsdkihhhhhhmkvvtfgeimlrlsppdhkrifqtdsfdvtyggaeanvaaflaqmgld
ayfvtklpnnplgdaaaghlrkfgvktdyiarggnrigiyfleigasqrpskvvydrahs
aiseakredfdwekildgarwfhfsgitpplgkelpliledalkvanekgvtvscdlnyr
arlwtkeeaqkvmipfmeyvdvlianeediekvlgisvegldlktgklnreayakiaeev
trkynfktvgitlresisatvnywsvmvfengqphfsnryeihivdrvgagdsfagaliy
gslmgfdsqkkaefaaaasclkhtipgdfvvlsieeieklasgatsgrver

    Sequence, based on observed residues (ATOM records): (download) 
    >1j5vB (B:)
hmkvvtfgeimlrlsppdhkrifqtdsfdvtyggaeanvaaflaqmgldayfvtklpnnp
lgdaaaghlrkfgvktdyiarggnrigiyfleigasqrpskvvydrahsaiseakredfd
wekildgarwfhfsgitpplgkelpliledalkvanekgvtvscdlnyrarlwtkeeaqk
vmipfmeyvdvlianeediekvlgisvenreayakiaeevtrkynfktvgitlresisat
vnywsvmvfengqphfsnryeihivdrvgagdsfagaliygslmgfdsqkkaefaaaasc
lkhtipgdfvvlsieeieklas

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.