PDB entry 1j2b

View 1j2b on RCSB PDB site
Description: Crystal Structure Of Archaeosine tRNA-Guanine Transglycosylase Complexed With lambda-form tRNA(Val)
Class: transferase/RNA
Keywords: transferase, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics
Deposited on 2002-12-29, released 2003-05-27
The last revision prior to the SCOP 1.73 freeze date was dated 2003-05-27, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.225
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: archaeosine tRNA-guanine transglycosylase
    Species: Pyrococcus horikoshii
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1j2ba1, d1j2ba2, d1j2ba3
  • Chain 'B':
    Compound: archaeosine tRNA-guanine transglycosylase
    Species: Pyrococcus horikoshii
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1j2bb1, d1j2bb2, d1j2bb3
  • Chain 'C':
    Compound: tRNA(val)
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: tRNA(val)
    Species: synthetic, synthetic
  • Heterogens: ZN, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1j2bA (A:)
msrgdkmlkfeikardgagrigklevngkkietpaimpvvnpkqmvvepkelekmgfeii
itnsyiiykdeelrrkalelgihrmldyngiievdsgsfqlmkygsievsnreiiefqhr
igvdigtfldiptppdapreqavkeleitlsrareaeeikeipmnatiqgstytdlrrya
arrlssmnfeihpiggvvpllesyrfrdvvdivisskmalrpdrpvhlfgaghpivfala
vamgvdlfdsasyalyakddrymtpegtkrldeldyfpcscpvcskytpqelrempkeer
trllalhnlwvikeeikrvkqaikegelwrlvderarshpklysaykrllehytfleefe
pitkksalfkisneslrwpvvrrakeraksinerfgelvehpifgrvsrylsltypfaqs
eaeddfkiekptkedaikyvmaiaeyqfgegasrafddakvelsktgmprqvkvngkrla
tvraddglltlgiegakrlhrvlpyprmrvvvnkeaepfarkgkdvfakfvifadpgirp
ydevlvvnendellatgqallsgremivfqygravkvrkgve

    Sequence, based on observed residues (ATOM records): (download) 
    >1j2bA (A:)
mlkfeikardgagrigklevngkkietpaimpvvnpkqmvvepkelekmgfeiiitnsyi
iykdeelrrkalelgihrmldyngiievdsgsfqlmkygsievsnreiiefqhrigvdig
tfldiptppdapreqavkeleitlsrareaeeikeipmnatiqgstytdlrryaarrlss
mnfeihpiggvvpllesyrfrdvvdivisskmalrpdrpvhlfgaghpivfalavamgvd
lfdsasyalyakddrymtpegtkrldeldyfpcscpvcskytpqelrempkeertrllal
hnlwvikeeikrvkqaikegelwrlvderarshpklysaykrllehytfleefepitkks
alfkisneslrwpvvrrakeraksinerfgelvehpifgrvsrylsltypfaqseaeddf
kiekptkedaikyvmaiaeyqfgegasrafddakvelsktgmprqvkvngkrlatvradd
glltlgiegakrlhrvlpyprmrvvvnkeaepfarkgkdvfakfvifadpgirpydevlv
vnendellatgqallsgremivfqygravkvrkgve

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1j2bB (B:)
msrgdkmlkfeikardgagrigklevngkkietpaimpvvnpkqmvvepkelekmgfeii
itnsyiiykdeelrrkalelgihrmldyngiievdsgsfqlmkygsievsnreiiefqhr
igvdigtfldiptppdapreqavkeleitlsrareaeeikeipmnatiqgstytdlrrya
arrlssmnfeihpiggvvpllesyrfrdvvdivisskmalrpdrpvhlfgaghpivfala
vamgvdlfdsasyalyakddrymtpegtkrldeldyfpcscpvcskytpqelrempkeer
trllalhnlwvikeeikrvkqaikegelwrlvderarshpklysaykrllehytfleefe
pitkksalfkisneslrwpvvrrakeraksinerfgelvehpifgrvsrylsltypfaqs
eaeddfkiekptkedaikyvmaiaeyqfgegasrafddakvelsktgmprqvkvngkrla
tvraddglltlgiegakrlhrvlpyprmrvvvnkeaepfarkgkdvfakfvifadpgirp
ydevlvvnendellatgqallsgremivfqygravkvrkgve

    Sequence, based on observed residues (ATOM records): (download) 
    >1j2bB (B:)
mlkfeikardgagrigklevngkkietpaimpvvnpkqmvvepkelekmgfeiiitnsyi
iykdeelrrkalelgihrmldyngiievdsgsfqlmkygsievsnreiiefqhrigvdig
tfldiptppdapreqavkeleitlsrareaeeikeipmnatiqgstytdlrryaarrlss
mnfeihpiggvvpllesyrfrdvvdivisskmalrpdrpvhlfgaghpivfalavamgvd
lfdsasyalyakddrymtpegtkrldeldyfpcscpvcskytpqelrempkeertrllal
hnlwvikeeikrvkqaikegelwrlvderarshpklysaykrllehytfleefepitkks
alfkisneslrwpvvrrakeraksinerfgelvehpifgrvsrylsltypfaqseaeddf
kiekptkedaikyvmaiaeyqfgegasrafddakvelsktgmprqvkvngkrlatvradd
glltlgiegakrlhrvlpyprmrvvvnkeaepfarkgkdvfakfvifadpgirpydevlv
vnendellatgqallsgremivfqygravkvrkgve

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.