PDB entry 1iqa

View 1iqa on RCSB PDB site
Description: crystal structure of the extracellular domain of mouse rank ligand
Class: cytokine
Keywords: homotrimer, beta-strand jellyroll, rankl, rank ligand, rank, cytokine, tnf, bone remodeling, osteoclast differentiation factor
Deposited on 2001-07-11, released 2002-03-13
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.226
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: receptor activator of nuclear factor kappa b ligand
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O35235 (Start-159)
      • modified residue (41)
      • modified residue (81)
      • modified residue (98)
    Domains in SCOPe 2.03: d1iqaa_
  • Chain 'B':
    Compound: receptor activator of nuclear factor kappa b ligand
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O35235 (Start-159)
      • modified residue (41)
      • modified residue (81)
      • modified residue (98)
    Domains in SCOPe 2.03: d1iqab_
  • Chain 'C':
    Compound: receptor activator of nuclear factor kappa b ligand
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O35235 (Start-159)
      • modified residue (41)
      • modified residue (81)
      • modified residue (98)
    Domains in SCOPe 2.03: d1iqac_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1iqaA (A:)
gkpeaqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyyly
anicfrhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinv
ggffklrageeisiqvsnpslldpdqdatyfgafkvqdid

    Sequence, based on observed residues (ATOM records): (download) 
    >1iqaA (A:)
aqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyylyanic
frhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinvggff
klrageeisiqvsnpslldpdqdatyfgafkvqdid

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1iqaB (B:)
gkpeaqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyyly
anicfrhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinv
ggffklrageeisiqvsnpslldpdqdatyfgafkvqdid

    Sequence, based on observed residues (ATOM records): (download) 
    >1iqaB (B:)
aqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyylyanic
frhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinvggff
klrageeisiqvsnpslldpdqdatyfgafkvqdid

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1iqaC (C:)
gkpeaqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyyly
anicfrhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinv
ggffklrageeisiqvsnpslldpdqdatyfgafkvqdid

    Sequence, based on observed residues (ATOM records): (download) 
    >1iqaC (C:)
aqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyylyanic
frhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinvggff
klrageeisiqvsnpslldpdqdatyfgafkvqdid