PDB entry 1iqa
View 1iqa on RCSB PDB site
Description: crystal structure of the extracellular domain of mouse rank ligand
Class: cytokine
Keywords: homotrimer, beta-strand jellyroll, rankl, rank ligand, rank, cytokine, tnf, bone remodeling, osteoclast differentiation factor
Deposited on
2001-07-11, released
2002-03-13
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.226
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: receptor activator of nuclear factor kappa b ligand
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot O35235 (Start-159)
- modified residue (41)
- modified residue (81)
- modified residue (98)
Domains in SCOPe 2.08: d1iqaa_ - Chain 'B':
Compound: receptor activator of nuclear factor kappa b ligand
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot O35235 (Start-159)
- modified residue (41)
- modified residue (81)
- modified residue (98)
Domains in SCOPe 2.08: d1iqab_ - Chain 'C':
Compound: receptor activator of nuclear factor kappa b ligand
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- Uniprot O35235 (Start-159)
- modified residue (41)
- modified residue (81)
- modified residue (98)
Domains in SCOPe 2.08: d1iqac_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1iqaA (A:)
gkpeaqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyyly
anicfrhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinv
ggffklrageeisiqvsnpslldpdqdatyfgafkvqdid
Sequence, based on observed residues (ATOM records): (download)
>1iqaA (A:)
aqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyylyanic
frhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinvggff
klrageeisiqvsnpslldpdqdatyfgafkvqdid
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1iqaB (B:)
gkpeaqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyyly
anicfrhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinv
ggffklrageeisiqvsnpslldpdqdatyfgafkvqdid
Sequence, based on observed residues (ATOM records): (download)
>1iqaB (B:)
aqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyylyanic
frhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinvggff
klrageeisiqvsnpslldpdqdatyfgafkvqdid
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1iqaC (C:)
gkpeaqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyyly
anicfrhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinv
ggffklrageeisiqvsnpslldpdqdatyfgafkvqdid
Sequence, based on observed residues (ATOM records): (download)
>1iqaC (C:)
aqpfahltinaasipsgshkvtlsswyhdrgwakisnmtlsngklrvnqdgfyylyanic
frhhetsgsvptdylqlmvyvvktsikipsshnlmkggstknwsgnsefhfysinvggff
klrageeisiqvsnpslldpdqdatyfgafkvqdid