PDB entry 1im3
View 1im3 on RCSB PDB site
Description: Crystal Structure of the human cytomegalovirus protein US2 bound to the MHC class I molecule HLA-A2/tax
Class: Viral protein/Immune system
Keywords: Beta sheet, Beta sandwhich, Immunoglobulin (Ig) fold, immunoglobulin (IG)-like domain, protein complex, alpha helix, Viral protein/Immune system COMPLEX
Deposited on
2001-05-09, released
2001-06-06
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.206
AEROSPACI score: 0.4
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3a1, d1im3a2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: Beta 2-microglobulin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3b_ - Chain 'C':
Compound: Human T-cell lymphotropic virus type 1 Tax peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: cytomegalovirus protein US2
Species: Human herpesvirus 5 [TaxId:10359]
Gene: US2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3d_ - Chain 'E':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3e1, d1im3e2 - Chain 'F':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: Beta 2-microglobulin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3f_ - Chain 'G':
Compound: Human T-cell lymphotropic virus type 1 Tax peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: cytomegalovirus protein US2
Species: Human herpesvirus 5 [TaxId:10359]
Gene: US2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3h_ - Chain 'I':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3i1, d1im3i2 - Chain 'J':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: Beta 2-microglobulin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3j_ - Chain 'K':
Compound: Human T-cell lymphotropic virus type 1 Tax peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: cytomegalovirus protein US2
Species: Human herpesvirus 5 [TaxId:10359]
Gene: US2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3l_ - Chain 'M':
Compound: HLA class I histocompatibility antigen, A-2 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3m1, d1im3m2 - Chain 'N':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: Beta 2-microglobulin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3n_ - Chain 'O':
Compound: Human T-cell lymphotropic virus type 1 Tax peptide
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: cytomegalovirus protein US2
Species: Human herpesvirus 5 [TaxId:10359]
Gene: US2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1im3p_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3A (A:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwe
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3B (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3D (D:)
pwfqiednrcyidngklfargsivgnmsrfvfdpkadyggvgenlyvhaddvefvpgesl
kwnvrnldvmpifetlalrlvlqgdviwlrcvpel
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3E (E:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwe
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3F (F:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3H (H:)
pwfqiednrcyidngklfargsivgnmsrfvfdpkadyggvgenlyvhaddvefvpgesl
kwnvrnldvmpifetlalrlvlqgdviwlrcvpel
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3I (I:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwe
- Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3J (J:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'K':
No sequence available.
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3L (L:)
pwfqiednrcyidngklfargsivgnmsrfvfdpkadyggvgenlyvhaddvefvpgesl
kwnvrnldvmpifetlalrlvlqgdviwlrcvpel
- Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3M (M:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwe
- Chain 'N':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3N (N:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'O':
No sequence available.
- Chain 'P':
Sequence; same for both SEQRES and ATOM records: (download)
>1im3P (P:)
pwfqiednrcyidngklfargsivgnmsrfvfdpkadyggvgenlyvhaddvefvpgesl
kwnvrnldvmpifetlalrlvlqgdviwlrcvpel