PDB entry 1ikn

View 1ikn on RCSB PDB site
Description: ikappabalpha/nf-kappab complex
Class: transcription factor
Keywords: transcription factor, ikb/nfkb complex
Deposited on 1998-11-13, released 1999-04-12
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.223
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (nf-kappa-b p65 subunit)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1ikna1, d1ikna2
  • Chain 'C':
    Compound: protein (nf-kappa-b p50d subunit)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1iknc_
  • Chain 'D':
    Compound: protein (I-kappa-b-alpha)
    Species: Homo sapiens [TaxId:9606]
    Gene: MAD-3
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1iknd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1iknA (A:)
pyveiieqpkqrgmrfrykcegrsagsipgerstdttkthptikingytgpgtvrislvt
kdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnn
npfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnrapntaelkicr
vnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppya
dpslqapvrvsmqlrrpsdrelsepmefqylpdtddrhrieekrkr

    Sequence, based on observed residues (ATOM records): (download) 
    >1iknA (A:)
pyveiieqpkqrgmrfrykcegrsagsipgerstdttkthptikingytgpgtvrislvt
kdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnn
npfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnrataelkicrvn
rnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppyadp
slqapvrvsmqlrrpsdrelsepmefqylpdtddrhrieekrk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1iknC (C:)
asnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvh
rqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyypeikdkeevqrkrqk

    Sequence, based on observed residues (ATOM records): (download) 
    >1iknC (C:)
asnlkivrmdrtagcvtggeeiyllcdkvqkddiqirfyeeeenggvwegfgdfsptdvh
rqfaivfktpkykdvnitkpasvfvqlrrksdletsepkpflyypeikdkeev

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1iknD (D:)
kqqltedgdsflhlaiiheekaltmevirqvkgdlaflnfqnnlqqtplhlavitnqpei
aeallgagcdpelrdfrgntplhlaceqgclasvgvltqscttphlhsilkatnynghtc
lhlasihgylgivellvslgadvnaqepcngrtalhlavdlqnpdlvslllkcgadvnrv
tyqgyspyqltwgrpstriqqqlgqltlenlqmlpesedeesydtesefteftede

    Sequence, based on observed residues (ATOM records): (download) 
    >1iknD (D:)
dgdsflhlaiiheekaltmevirlaflnfqnnlqqtplhlavitnqpeiaeallgagcdp
elrdfrgntplhlaceqgclasvgvltqscttphlhsilkatnynghtclhlasihgylg
ivellvslgadvnaqepcngrtalhlavdlqnpdlvslllkcgadvnrvtyqgyspyqlt
wgrpstriqqqlgqltlenlqmlpesedeesydtes